Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02280 and OLJFJH_02285 are separated by 62 nucleotides
OLJFJH_02280: OLJFJH_02280 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 401,927 to 402,790
_02280
OLJFJH_02285: OLJFJH_02285 - penicillin-binding protein activator, at 402,853 to 404,877
_02285
Position (kb)
401
402
403 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 401.512 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.961 kb on - strand at 402.178 kb on + strand, within OLJFJH_02280 at 402.219 kb on + strand, within OLJFJH_02280 at 402.220 kb on - strand, within OLJFJH_02280 at 402.389 kb on + strand, within OLJFJH_02280 at 402.497 kb on - strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.747 kb on + strand at 402.747 kb on + strand at 402.747 kb on + strand at 402.747 kb on + strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.766 kb on + strand at 402.767 kb on - strand at 402.817 kb on - strand at 402.852 kb on + strand at 402.852 kb on + strand at 402.853 kb on - strand at 402.869 kb on + strand at 402.870 kb on - strand at 402.997 kb on + strand at 402.998 kb on - strand at 403.000 kb on + strand at 403.000 kb on + strand at 403.001 kb on - strand at 403.032 kb on + strand at 403.053 kb on - strand at 403.083 kb on + strand, within OLJFJH_02285 at 403.083 kb on + strand, within OLJFJH_02285 at 403.084 kb on - strand, within OLJFJH_02285 at 403.179 kb on + strand, within OLJFJH_02285 at 403.267 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.325 kb on - strand, within OLJFJH_02285 at 403.435 kb on - strand, within OLJFJH_02285 at 403.469 kb on + strand, within OLJFJH_02285 at 403.469 kb on + strand, within OLJFJH_02285 at 403.486 kb on + strand, within OLJFJH_02285 at 403.486 kb on + strand, within OLJFJH_02285 at 403.488 kb on + strand, within OLJFJH_02285 at 403.489 kb on - strand, within OLJFJH_02285 at 403.489 kb on - strand, within OLJFJH_02285 at 403.555 kb on + strand, within OLJFJH_02285 at 403.555 kb on + strand, within OLJFJH_02285 at 403.556 kb on - strand, within OLJFJH_02285 at 403.557 kb on + strand, within OLJFJH_02285 at 403.557 kb on + strand, within OLJFJH_02285 at 403.558 kb on - strand, within OLJFJH_02285 at 403.558 kb on - strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.608 kb on - strand, within OLJFJH_02285 at 403.608 kb on - strand, within OLJFJH_02285 at 403.627 kb on - strand, within OLJFJH_02285 at 403.670 kb on - strand, within OLJFJH_02285
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 401,512 + -1.2 401,956 + +1.5 401,956 + -0.2 401,956 + +0.5 401,956 + -3.0 401,957 - -0.4 401,957 - -0.5 401,957 - -1.9 401,957 - +1.1 401,957 - -0.1 401,957 - +1.6 401,957 - -0.1 401,958 + +0.4 401,958 + +0.0 401,958 + -1.1 401,958 + -2.5 401,959 - +1.9 401,959 - -4.5 401,959 - +2.1 401,959 - -1.4 401,959 - -2.5 401,959 - +1.6 401,961 - +0.9 402,178 + OLJFJH_02280 0.29 +2.2 402,219 + OLJFJH_02280 0.34 -0.8 402,220 - OLJFJH_02280 0.34 +1.1 402,389 + OLJFJH_02280 0.53 +0.0 402,497 - OLJFJH_02280 0.66 -0.1 402,655 + OLJFJH_02280 0.84 +1.1 402,655 + OLJFJH_02280 0.84 -0.2 402,655 + OLJFJH_02280 0.84 -0.9 402,655 + OLJFJH_02280 0.84 +0.8 402,655 + OLJFJH_02280 0.84 +1.6 402,656 - OLJFJH_02280 0.84 +2.6 402,656 - OLJFJH_02280 0.84 -2.7 402,656 - OLJFJH_02280 0.84 +0.9 402,747 + +1.3 402,747 + -3.8 402,747 + -1.3 402,747 + +1.3 402,748 - +1.8 402,748 - -1.7 402,748 - +0.2 402,748 - -2.4 402,766 + +0.2 402,767 - +2.2 402,817 - +1.0 402,852 + +0.1 402,852 + -1.0 402,853 - -0.4 402,869 + -0.9 402,870 - -1.4 402,997 + -1.8 402,998 - +0.1 403,000 + -2.6 403,000 + +0.1 403,001 - -2.1 403,032 + -1.5 403,053 - +0.4 403,083 + OLJFJH_02285 0.11 -1.5 403,083 + OLJFJH_02285 0.11 -0.1 403,084 - OLJFJH_02285 0.11 +0.4 403,179 + OLJFJH_02285 0.16 -1.4 403,267 + OLJFJH_02285 0.20 +1.1 403,324 + OLJFJH_02285 0.23 +1.4 403,324 + OLJFJH_02285 0.23 -3.0 403,324 + OLJFJH_02285 0.23 -2.5 403,324 + OLJFJH_02285 0.23 +0.7 403,325 - OLJFJH_02285 0.23 +0.2 403,435 - OLJFJH_02285 0.29 +2.1 403,469 + OLJFJH_02285 0.30 +0.2 403,469 + OLJFJH_02285 0.30 -0.8 403,486 + OLJFJH_02285 0.31 -0.9 403,486 + OLJFJH_02285 0.31 +3.3 403,488 + OLJFJH_02285 0.31 +0.1 403,489 - OLJFJH_02285 0.31 -1.5 403,489 - OLJFJH_02285 0.31 +0.0 403,555 + OLJFJH_02285 0.35 -2.6 403,555 + OLJFJH_02285 0.35 -0.3 403,556 - OLJFJH_02285 0.35 +1.0 403,557 + OLJFJH_02285 0.35 -1.3 403,557 + OLJFJH_02285 0.35 -1.8 403,558 - OLJFJH_02285 0.35 +0.3 403,558 - OLJFJH_02285 0.35 -2.7 403,607 + OLJFJH_02285 0.37 +1.3 403,607 + OLJFJH_02285 0.37 -3.0 403,607 + OLJFJH_02285 0.37 +2.2 403,608 - OLJFJH_02285 0.37 +0.4 403,608 - OLJFJH_02285 0.37 +1.2 403,627 - OLJFJH_02285 0.38 +0.2 403,670 - OLJFJH_02285 0.40 -2.0
Or see this region's nucleotide sequence