Strain Fitness in Erwinia amylovora T8 around OLJFJH_02280

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02280 and OLJFJH_02285 are separated by 62 nucleotides OLJFJH_02280: OLJFJH_02280 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 401,927 to 402,790 _02280 OLJFJH_02285: OLJFJH_02285 - penicillin-binding protein activator, at 402,853 to 404,877 _02285 Position (kb) 401 402 403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 401.512 kb on + strandat 401.956 kb on + strandat 401.956 kb on + strandat 401.956 kb on + strandat 401.956 kb on + strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.957 kb on - strandat 401.958 kb on + strandat 401.958 kb on + strandat 401.958 kb on + strandat 401.958 kb on + strandat 401.959 kb on - strandat 401.959 kb on - strandat 401.959 kb on - strandat 401.959 kb on - strandat 401.959 kb on - strandat 401.959 kb on - strandat 401.961 kb on - strandat 402.178 kb on + strand, within OLJFJH_02280at 402.219 kb on + strand, within OLJFJH_02280at 402.220 kb on - strand, within OLJFJH_02280at 402.389 kb on + strand, within OLJFJH_02280at 402.497 kb on - strand, within OLJFJH_02280at 402.655 kb on + strand, within OLJFJH_02280at 402.655 kb on + strand, within OLJFJH_02280at 402.655 kb on + strand, within OLJFJH_02280at 402.655 kb on + strand, within OLJFJH_02280at 402.655 kb on + strand, within OLJFJH_02280at 402.656 kb on - strand, within OLJFJH_02280at 402.656 kb on - strand, within OLJFJH_02280at 402.656 kb on - strand, within OLJFJH_02280at 402.747 kb on + strandat 402.747 kb on + strandat 402.747 kb on + strandat 402.747 kb on + strandat 402.748 kb on - strandat 402.748 kb on - strandat 402.748 kb on - strandat 402.748 kb on - strandat 402.766 kb on + strandat 402.767 kb on - strandat 402.817 kb on - strandat 402.852 kb on + strandat 402.852 kb on + strandat 402.853 kb on - strandat 402.869 kb on + strandat 402.870 kb on - strandat 402.997 kb on + strandat 402.998 kb on - strandat 403.000 kb on + strandat 403.000 kb on + strandat 403.001 kb on - strandat 403.032 kb on + strandat 403.053 kb on - strandat 403.083 kb on + strand, within OLJFJH_02285at 403.083 kb on + strand, within OLJFJH_02285at 403.084 kb on - strand, within OLJFJH_02285at 403.179 kb on + strand, within OLJFJH_02285at 403.267 kb on + strand, within OLJFJH_02285at 403.324 kb on + strand, within OLJFJH_02285at 403.324 kb on + strand, within OLJFJH_02285at 403.324 kb on + strand, within OLJFJH_02285at 403.324 kb on + strand, within OLJFJH_02285at 403.325 kb on - strand, within OLJFJH_02285at 403.435 kb on - strand, within OLJFJH_02285at 403.469 kb on + strand, within OLJFJH_02285at 403.469 kb on + strand, within OLJFJH_02285at 403.486 kb on + strand, within OLJFJH_02285at 403.486 kb on + strand, within OLJFJH_02285at 403.488 kb on + strand, within OLJFJH_02285at 403.489 kb on - strand, within OLJFJH_02285at 403.489 kb on - strand, within OLJFJH_02285at 403.555 kb on + strand, within OLJFJH_02285at 403.555 kb on + strand, within OLJFJH_02285at 403.556 kb on - strand, within OLJFJH_02285at 403.557 kb on + strand, within OLJFJH_02285at 403.557 kb on + strand, within OLJFJH_02285at 403.558 kb on - strand, within OLJFJH_02285at 403.558 kb on - strand, within OLJFJH_02285at 403.607 kb on + strand, within OLJFJH_02285at 403.607 kb on + strand, within OLJFJH_02285at 403.607 kb on + strand, within OLJFJH_02285at 403.608 kb on - strand, within OLJFJH_02285at 403.608 kb on - strand, within OLJFJH_02285at 403.627 kb on - strand, within OLJFJH_02285at 403.670 kb on - strand, within OLJFJH_02285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
401,512 + -1.2
401,956 + +1.5
401,956 + -0.2
401,956 + +0.5
401,956 + -3.0
401,957 - -0.4
401,957 - -0.5
401,957 - -1.9
401,957 - +1.1
401,957 - -0.1
401,957 - +1.6
401,957 - -0.1
401,958 + +0.4
401,958 + +0.0
401,958 + -1.1
401,958 + -2.5
401,959 - +1.9
401,959 - -4.5
401,959 - +2.1
401,959 - -1.4
401,959 - -2.5
401,959 - +1.6
401,961 - +0.9
402,178 + OLJFJH_02280 0.29 +2.2
402,219 + OLJFJH_02280 0.34 -0.8
402,220 - OLJFJH_02280 0.34 +1.1
402,389 + OLJFJH_02280 0.53 +0.0
402,497 - OLJFJH_02280 0.66 -0.1
402,655 + OLJFJH_02280 0.84 +1.1
402,655 + OLJFJH_02280 0.84 -0.2
402,655 + OLJFJH_02280 0.84 -0.9
402,655 + OLJFJH_02280 0.84 +0.8
402,655 + OLJFJH_02280 0.84 +1.6
402,656 - OLJFJH_02280 0.84 +2.6
402,656 - OLJFJH_02280 0.84 -2.7
402,656 - OLJFJH_02280 0.84 +0.9
402,747 + +1.3
402,747 + -3.8
402,747 + -1.3
402,747 + +1.3
402,748 - +1.8
402,748 - -1.7
402,748 - +0.2
402,748 - -2.4
402,766 + +0.2
402,767 - +2.2
402,817 - +1.0
402,852 + +0.1
402,852 + -1.0
402,853 - -0.4
402,869 + -0.9
402,870 - -1.4
402,997 + -1.8
402,998 - +0.1
403,000 + -2.6
403,000 + +0.1
403,001 - -2.1
403,032 + -1.5
403,053 - +0.4
403,083 + OLJFJH_02285 0.11 -1.5
403,083 + OLJFJH_02285 0.11 -0.1
403,084 - OLJFJH_02285 0.11 +0.4
403,179 + OLJFJH_02285 0.16 -1.4
403,267 + OLJFJH_02285 0.20 +1.1
403,324 + OLJFJH_02285 0.23 +1.4
403,324 + OLJFJH_02285 0.23 -3.0
403,324 + OLJFJH_02285 0.23 -2.5
403,324 + OLJFJH_02285 0.23 +0.7
403,325 - OLJFJH_02285 0.23 +0.2
403,435 - OLJFJH_02285 0.29 +2.1
403,469 + OLJFJH_02285 0.30 +0.2
403,469 + OLJFJH_02285 0.30 -0.8
403,486 + OLJFJH_02285 0.31 -0.9
403,486 + OLJFJH_02285 0.31 +3.3
403,488 + OLJFJH_02285 0.31 +0.1
403,489 - OLJFJH_02285 0.31 -1.5
403,489 - OLJFJH_02285 0.31 +0.0
403,555 + OLJFJH_02285 0.35 -2.6
403,555 + OLJFJH_02285 0.35 -0.3
403,556 - OLJFJH_02285 0.35 +1.0
403,557 + OLJFJH_02285 0.35 -1.3
403,557 + OLJFJH_02285 0.35 -1.8
403,558 - OLJFJH_02285 0.35 +0.3
403,558 - OLJFJH_02285 0.35 -2.7
403,607 + OLJFJH_02285 0.37 +1.3
403,607 + OLJFJH_02285 0.37 -3.0
403,607 + OLJFJH_02285 0.37 +2.2
403,608 - OLJFJH_02285 0.37 +0.4
403,608 - OLJFJH_02285 0.37 +1.2
403,627 - OLJFJH_02285 0.38 +0.2
403,670 - OLJFJH_02285 0.40 -2.0

Or see this region's nucleotide sequence