Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02105 and OLJFJH_02110 are separated by 752 nucleotides OLJFJH_02110 and OLJFJH_02115 are separated by 308 nucleotides
OLJFJH_02105: OLJFJH_02105 - PTS system glucitol/sorbitol-specific EIIC component, at 369,821 to 370,369
_02105
OLJFJH_02110: OLJFJH_02110 - hypothetical protein, at 371,122 to 371,355
_02110
OLJFJH_02115: OLJFJH_02115 - pyrroloquinoline quinone biosynthesis protein PqqF, at 371,664 to 374,054
_02115
Position (kb) 371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 370.174 kb on + strand, within OLJFJH_02105 at 370.175 kb on - strand, within OLJFJH_02105 at 370.232 kb on + strand, within OLJFJH_02105 at 370.233 kb on - strand, within OLJFJH_02105 at 370.233 kb on - strand, within OLJFJH_02105 at 370.256 kb on + strand, within OLJFJH_02105 at 370.257 kb on - strand, within OLJFJH_02105 at 370.257 kb on - strand, within OLJFJH_02105 at 370.334 kb on - strand at 370.357 kb on + strand at 370.357 kb on + strand at 370.424 kb on - strand at 370.556 kb on + strand at 370.556 kb on + strand at 370.556 kb on + strand at 370.557 kb on - strand at 370.639 kb on + strand at 370.686 kb on + strand at 370.687 kb on - strand at 370.687 kb on - strand at 370.687 kb on - strand at 370.700 kb on - strand at 370.765 kb on - strand at 370.879 kb on + strand at 370.880 kb on - strand at 370.884 kb on - strand at 370.884 kb on - strand at 370.884 kb on - strand at 370.904 kb on - strand at 370.939 kb on - strand at 371.056 kb on + strand at 371.254 kb on + strand, within OLJFJH_02110 at 371.254 kb on + strand, within OLJFJH_02110 at 371.255 kb on - strand, within OLJFJH_02110 at 371.305 kb on + strand, within OLJFJH_02110 at 371.341 kb on + strand at 371.341 kb on + strand at 371.342 kb on - strand at 371.344 kb on - strand at 371.344 kb on - strand at 371.346 kb on + strand at 371.505 kb on + strand at 371.507 kb on + strand at 371.508 kb on - strand at 371.624 kb on - strand at 371.773 kb on + strand at 371.773 kb on + strand at 371.773 kb on + strand at 371.774 kb on - strand at 371.774 kb on - strand at 372.026 kb on - strand, within OLJFJH_02115 at 372.046 kb on + strand, within OLJFJH_02115 at 372.046 kb on + strand, within OLJFJH_02115 at 372.046 kb on + strand, within OLJFJH_02115 at 372.047 kb on - strand, within OLJFJH_02115 at 372.047 kb on - strand, within OLJFJH_02115 at 372.054 kb on - strand, within OLJFJH_02115 at 372.094 kb on + strand, within OLJFJH_02115 at 372.094 kb on + strand, within OLJFJH_02115 at 372.095 kb on - strand, within OLJFJH_02115 at 372.199 kb on + strand, within OLJFJH_02115
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 370,174 + OLJFJH_02105 0.64 +0.2 370,175 - OLJFJH_02105 0.64 -1.4 370,232 + OLJFJH_02105 0.75 +1.5 370,233 - OLJFJH_02105 0.75 +0.9 370,233 - OLJFJH_02105 0.75 -0.3 370,256 + OLJFJH_02105 0.79 +0.5 370,257 - OLJFJH_02105 0.79 -1.1 370,257 - OLJFJH_02105 0.79 -3.4 370,334 - +0.4 370,357 + +2.8 370,357 + +1.1 370,424 - +2.7 370,556 + +0.7 370,556 + +0.6 370,556 + -1.8 370,557 - +0.8 370,639 + -0.2 370,686 + +0.3 370,687 - +1.0 370,687 - -3.1 370,687 - -0.0 370,700 - +0.4 370,765 - +1.8 370,879 + -3.0 370,880 - -0.8 370,884 - -1.3 370,884 - +0.4 370,884 - -0.7 370,904 - -0.0 370,939 - -0.2 371,056 + +0.5 371,254 + OLJFJH_02110 0.56 +0.6 371,254 + OLJFJH_02110 0.56 +3.3 371,255 - OLJFJH_02110 0.57 -0.3 371,305 + OLJFJH_02110 0.78 +1.7 371,341 + +4.5 371,341 + +0.3 371,342 - +1.3 371,344 - +0.5 371,344 - +0.2 371,346 + -0.0 371,505 + -1.5 371,507 + +0.4 371,508 - -0.5 371,624 - -1.0 371,773 + +2.3 371,773 + +0.5 371,773 + -3.5 371,774 - +1.9 371,774 - -0.3 372,026 - OLJFJH_02115 0.15 -3.0 372,046 + OLJFJH_02115 0.16 -0.5 372,046 + OLJFJH_02115 0.16 -1.2 372,046 + OLJFJH_02115 0.16 +1.1 372,047 - OLJFJH_02115 0.16 -1.4 372,047 - OLJFJH_02115 0.16 +0.4 372,054 - OLJFJH_02115 0.16 +0.1 372,094 + OLJFJH_02115 0.18 -0.3 372,094 + OLJFJH_02115 0.18 -0.7 372,095 - OLJFJH_02115 0.18 +0.7 372,199 + OLJFJH_02115 0.22 +0.4
Or see this region's nucleotide sequence