Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01910 and OLJFJH_01915 are separated by 14 nucleotides OLJFJH_01915 and OLJFJH_01920 overlap by 38 nucleotides OLJFJH_01920 and OLJFJH_01925 are separated by 172 nucleotides
OLJFJH_01910: OLJFJH_01910 - pyrimidine 5'-nucleotidase, at 340,228 to 340,908
_01910
OLJFJH_01915: OLJFJH_01915 - ribosomal protein S18-alanine N-acetyltransferase, at 340,923 to 341,363
_01915
OLJFJH_01920: OLJFJH_01920 - DNA polymerase III subunit psi, at 341,326 to 341,745
_01920
OLJFJH_01925: OLJFJH_01925 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 341,918 to 342,946
_01925
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 340.115 kb on - strand at 340.140 kb on - strand at 340.240 kb on + strand at 340.312 kb on - strand, within OLJFJH_01910 at 340.390 kb on + strand, within OLJFJH_01910 at 340.430 kb on + strand, within OLJFJH_01910 at 340.477 kb on + strand, within OLJFJH_01910 at 340.478 kb on - strand, within OLJFJH_01910 at 340.496 kb on + strand, within OLJFJH_01910 at 340.557 kb on + strand, within OLJFJH_01910 at 340.570 kb on - strand, within OLJFJH_01910 at 340.778 kb on + strand, within OLJFJH_01910 at 340.787 kb on + strand, within OLJFJH_01910 at 340.814 kb on + strand, within OLJFJH_01910 at 340.883 kb on - strand at 340.943 kb on + strand at 340.943 kb on + strand at 340.943 kb on + strand at 340.943 kb on + strand at 340.944 kb on - strand at 340.979 kb on - strand, within OLJFJH_01915 at 341.021 kb on - strand, within OLJFJH_01915 at 341.021 kb on - strand, within OLJFJH_01915 at 341.088 kb on - strand, within OLJFJH_01915 at 341.088 kb on - strand, within OLJFJH_01915 at 341.088 kb on - strand, within OLJFJH_01915 at 341.099 kb on + strand, within OLJFJH_01915 at 341.100 kb on - strand, within OLJFJH_01915 at 341.246 kb on - strand, within OLJFJH_01915 at 341.835 kb on - strand at 341.845 kb on + strand at 341.845 kb on + strand at 341.846 kb on - strand at 341.846 kb on - strand at 341.846 kb on - strand at 341.846 kb on - strand at 341.846 kb on - strand at 341.867 kb on - strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.884 kb on + strand at 341.885 kb on - strand at 341.885 kb on - strand at 341.930 kb on - strand at 341.949 kb on + strand at 342.062 kb on + strand, within OLJFJH_01925 at 342.161 kb on + strand, within OLJFJH_01925 at 342.178 kb on + strand, within OLJFJH_01925 at 342.344 kb on + strand, within OLJFJH_01925 at 342.345 kb on - strand, within OLJFJH_01925 at 342.345 kb on - strand, within OLJFJH_01925
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 340,115 - +0.8 340,140 - -2.2 340,240 + -1.4 340,312 - OLJFJH_01910 0.12 -2.0 340,390 + OLJFJH_01910 0.24 +0.6 340,430 + OLJFJH_01910 0.30 +0.9 340,477 + OLJFJH_01910 0.37 +0.3 340,478 - OLJFJH_01910 0.37 +0.5 340,496 + OLJFJH_01910 0.39 -0.8 340,557 + OLJFJH_01910 0.48 +0.3 340,570 - OLJFJH_01910 0.50 -0.3 340,778 + OLJFJH_01910 0.81 -2.4 340,787 + OLJFJH_01910 0.82 +1.2 340,814 + OLJFJH_01910 0.86 +0.3 340,883 - +0.5 340,943 + -1.4 340,943 + -0.5 340,943 + -3.1 340,943 + -0.5 340,944 - -3.2 340,979 - OLJFJH_01915 0.13 +3.7 341,021 - OLJFJH_01915 0.22 +0.3 341,021 - OLJFJH_01915 0.22 +1.1 341,088 - OLJFJH_01915 0.37 -3.2 341,088 - OLJFJH_01915 0.37 +0.7 341,088 - OLJFJH_01915 0.37 +1.1 341,099 + OLJFJH_01915 0.40 -0.2 341,100 - OLJFJH_01915 0.40 -0.7 341,246 - OLJFJH_01915 0.73 -0.3 341,835 - -2.0 341,845 + -1.9 341,845 + -0.9 341,846 - +0.2 341,846 - +0.7 341,846 - +0.5 341,846 - -1.1 341,846 - -2.0 341,867 - -3.0 341,884 + -1.9 341,884 + +1.3 341,884 + +0.3 341,884 + +0.1 341,884 + +0.8 341,884 + -1.0 341,884 + -0.5 341,885 - +1.4 341,885 - -0.2 341,930 - -2.5 341,949 + -0.6 342,062 + OLJFJH_01925 0.14 +0.3 342,161 + OLJFJH_01925 0.24 +0.9 342,178 + OLJFJH_01925 0.25 -0.8 342,344 + OLJFJH_01925 0.41 -3.6 342,345 - OLJFJH_01925 0.41 +0.2 342,345 - OLJFJH_01925 0.41 -3.4
Or see this region's nucleotide sequence