Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01895 and OLJFJH_01900 are separated by 19 nucleotides OLJFJH_01900 and OLJFJH_01905 are separated by 24 nucleotides
OLJFJH_01895: OLJFJH_01895 - type VI secretion system baseplate subunit TssK, at 336,850 to 338,193
_01895
OLJFJH_01900: OLJFJH_01900 - type VI secretion system lipoprotein TssJ, at 338,213 to 338,725
_01900
OLJFJH_01905: OLJFJH_01905 - SH3 domain-containing protein, at 338,750 to 339,250
_01905
Position (kb) 338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 337.489 kb on - strand, within OLJFJH_01895 at 337.513 kb on - strand, within OLJFJH_01895 at 337.531 kb on + strand, within OLJFJH_01895 at 337.590 kb on - strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.683 kb on + strand, within OLJFJH_01895 at 337.747 kb on + strand, within OLJFJH_01895 at 337.897 kb on + strand, within OLJFJH_01895 at 337.972 kb on + strand, within OLJFJH_01895 at 337.973 kb on - strand, within OLJFJH_01895 at 338.174 kb on - strand at 338.342 kb on - strand, within OLJFJH_01900 at 338.515 kb on - strand, within OLJFJH_01900 at 338.532 kb on - strand, within OLJFJH_01900 at 338.620 kb on - strand, within OLJFJH_01900 at 338.871 kb on - strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 339.064 kb on - strand, within OLJFJH_01905 at 339.095 kb on - strand, within OLJFJH_01905 at 339.116 kb on - strand, within OLJFJH_01905 at 339.222 kb on - strand at 339.253 kb on + strand at 339.254 kb on - strand at 339.254 kb on - strand at 339.308 kb on + strand at 339.308 kb on + strand at 339.309 kb on - strand at 339.331 kb on - strand at 339.594 kb on - strand at 339.603 kb on + strand at 339.616 kb on + strand at 339.621 kb on - strand at 339.664 kb on + strand at 339.665 kb on - strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.717 kb on + strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.718 kb on - strand at 339.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 337,489 - OLJFJH_01895 0.48 -0.2 337,513 - OLJFJH_01895 0.49 -0.8 337,531 + OLJFJH_01895 0.51 -3.9 337,590 - OLJFJH_01895 0.55 -1.0 337,620 + OLJFJH_01895 0.57 -1.2 337,620 + OLJFJH_01895 0.57 +0.9 337,637 + OLJFJH_01895 0.59 -0.6 337,637 + OLJFJH_01895 0.59 +1.2 337,637 + OLJFJH_01895 0.59 -1.0 337,637 + OLJFJH_01895 0.59 -2.4 337,637 + OLJFJH_01895 0.59 -0.4 337,638 - OLJFJH_01895 0.59 +1.0 337,638 - OLJFJH_01895 0.59 -0.8 337,683 + OLJFJH_01895 0.62 -1.2 337,747 + OLJFJH_01895 0.67 -0.8 337,897 + OLJFJH_01895 0.78 +1.0 337,972 + OLJFJH_01895 0.83 -0.7 337,973 - OLJFJH_01895 0.84 -1.7 338,174 - +0.8 338,342 - OLJFJH_01900 0.25 +2.7 338,515 - OLJFJH_01900 0.59 -2.7 338,532 - OLJFJH_01900 0.62 -0.3 338,620 - OLJFJH_01900 0.79 +0.9 338,871 - OLJFJH_01905 0.24 +0.5 338,919 + OLJFJH_01905 0.34 -0.5 338,919 + OLJFJH_01905 0.34 -3.1 338,919 + OLJFJH_01905 0.34 -0.9 338,920 - OLJFJH_01905 0.34 -1.4 338,920 - OLJFJH_01905 0.34 +4.9 339,064 - OLJFJH_01905 0.63 +1.4 339,095 - OLJFJH_01905 0.69 -0.8 339,116 - OLJFJH_01905 0.73 +0.7 339,222 - +0.2 339,253 + -0.5 339,254 - +0.8 339,254 - +1.7 339,308 + +0.3 339,308 + +0.5 339,309 - -3.0 339,331 - +1.0 339,594 - -3.4 339,603 + +0.4 339,616 + -1.2 339,621 - -0.3 339,664 + +0.6 339,665 - +0.5 339,717 + -0.3 339,717 + -0.2 339,717 + -1.2 339,717 + -4.2 339,717 + -0.4 339,717 + -2.4 339,718 - -0.6 339,718 - +1.1 339,718 - -0.0 339,718 - -0.4 339,721 + -2.3
Or see this region's nucleotide sequence