Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01555 and OLJFJH_01560 are separated by 65 nucleotides OLJFJH_01560 and OLJFJH_01565 are separated by 97 nucleotides
OLJFJH_01555: OLJFJH_01555 - energy-dependent translational throttle protein EttA, at 257,232 to 258,899
_01555
OLJFJH_01560: OLJFJH_01560 - LysR family transcriptional regulator, at 258,965 to 259,846
_01560
OLJFJH_01565: OLJFJH_01565 - zinc-binding alcohol dehydrogenase family protein, at 259,944 to 260,945
_01565
Position (kb) 258
259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 258.194 kb on + strand, within OLJFJH_01555 at 258.315 kb on - strand, within OLJFJH_01555 at 258.404 kb on - strand, within OLJFJH_01555 at 258.434 kb on + strand, within OLJFJH_01555 at 258.434 kb on + strand, within OLJFJH_01555 at 258.435 kb on - strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.510 kb on + strand, within OLJFJH_01555 at 258.511 kb on - strand, within OLJFJH_01555 at 258.511 kb on - strand, within OLJFJH_01555 at 258.511 kb on - strand, within OLJFJH_01555 at 258.879 kb on + strand at 258.879 kb on + strand at 258.880 kb on - strand at 258.887 kb on + strand at 258.887 kb on + strand at 258.888 kb on - strand at 258.888 kb on - strand at 258.888 kb on - strand at 258.897 kb on + strand at 258.897 kb on + strand at 258.897 kb on + strand at 258.898 kb on - strand at 258.986 kb on + strand at 258.987 kb on - strand at 259.042 kb on + strand at 259.043 kb on - strand at 259.195 kb on + strand, within OLJFJH_01560 at 259.224 kb on + strand, within OLJFJH_01560 at 259.225 kb on - strand, within OLJFJH_01560 at 259.225 kb on - strand, within OLJFJH_01560 at 259.225 kb on - strand, within OLJFJH_01560 at 259.274 kb on - strand, within OLJFJH_01560 at 259.274 kb on - strand, within OLJFJH_01560 at 259.489 kb on - strand, within OLJFJH_01560 at 259.838 kb on - strand at 259.858 kb on + strand at 259.858 kb on + strand at 259.859 kb on - strand at 259.910 kb on + strand at 259.911 kb on - strand at 259.911 kb on - strand at 259.911 kb on - strand at 259.992 kb on - strand at 259.992 kb on - strand at 260.216 kb on + strand, within OLJFJH_01565 at 260.217 kb on - strand, within OLJFJH_01565 at 260.384 kb on + strand, within OLJFJH_01565 at 260.385 kb on - strand, within OLJFJH_01565 at 260.538 kb on + strand, within OLJFJH_01565 at 260.538 kb on + strand, within OLJFJH_01565 at 260.539 kb on - strand, within OLJFJH_01565 at 260.539 kb on - strand, within OLJFJH_01565 at 260.590 kb on - strand, within OLJFJH_01565 at 260.591 kb on + strand, within OLJFJH_01565 at 260.708 kb on - strand, within OLJFJH_01565 at 260.741 kb on + strand, within OLJFJH_01565 at 260.741 kb on + strand, within OLJFJH_01565 at 260.741 kb on + strand, within OLJFJH_01565 at 260.742 kb on - strand, within OLJFJH_01565 at 260.742 kb on - strand, within OLJFJH_01565 at 260.745 kb on + strand, within OLJFJH_01565 at 260.745 kb on + strand, within OLJFJH_01565 at 260.746 kb on - strand, within OLJFJH_01565 at 260.762 kb on + strand, within OLJFJH_01565 at 260.762 kb on + strand, within OLJFJH_01565 at 260.763 kb on - strand, within OLJFJH_01565 at 260.828 kb on + strand, within OLJFJH_01565 at 260.828 kb on + strand, within OLJFJH_01565 at 260.829 kb on - strand, within OLJFJH_01565 at 260.829 kb on - strand, within OLJFJH_01565 at 260.829 kb on - strand, within OLJFJH_01565 at 260.833 kb on + strand, within OLJFJH_01565 at 260.834 kb on - strand, within OLJFJH_01565
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 258,194 + OLJFJH_01555 0.58 +0.9 258,315 - OLJFJH_01555 0.65 -1.5 258,404 - OLJFJH_01555 0.70 +1.6 258,434 + OLJFJH_01555 0.72 +0.5 258,434 + OLJFJH_01555 0.72 -3.4 258,435 - OLJFJH_01555 0.72 +0.1 258,510 + OLJFJH_01555 0.77 +0.3 258,510 + OLJFJH_01555 0.77 -1.9 258,510 + OLJFJH_01555 0.77 -0.7 258,510 + OLJFJH_01555 0.77 -1.5 258,510 + OLJFJH_01555 0.77 -2.9 258,510 + OLJFJH_01555 0.77 +1.5 258,510 + OLJFJH_01555 0.77 +0.1 258,510 + OLJFJH_01555 0.77 -0.4 258,511 - OLJFJH_01555 0.77 +0.9 258,511 - OLJFJH_01555 0.77 -0.6 258,511 - OLJFJH_01555 0.77 -0.8 258,879 + -3.8 258,879 + +0.3 258,880 - +0.2 258,887 + +0.3 258,887 + +0.5 258,888 - +0.4 258,888 - -0.2 258,888 - +0.8 258,897 + +1.4 258,897 + +1.5 258,897 + -0.3 258,898 - +0.4 258,986 + +0.8 258,987 - -3.4 259,042 + -1.6 259,043 - +2.5 259,195 + OLJFJH_01560 0.26 -0.9 259,224 + OLJFJH_01560 0.29 +0.2 259,225 - OLJFJH_01560 0.29 -0.5 259,225 - OLJFJH_01560 0.29 -0.2 259,225 - OLJFJH_01560 0.29 -0.5 259,274 - OLJFJH_01560 0.35 +0.8 259,274 - OLJFJH_01560 0.35 +8.0 259,489 - OLJFJH_01560 0.59 +0.4 259,838 - -1.7 259,858 + -0.8 259,858 + -1.9 259,859 - -1.6 259,910 + -2.9 259,911 - +0.2 259,911 - -0.8 259,911 - +2.0 259,992 - +0.1 259,992 - -0.5 260,216 + OLJFJH_01565 0.27 -1.3 260,217 - OLJFJH_01565 0.27 -0.8 260,384 + OLJFJH_01565 0.44 -0.1 260,385 - OLJFJH_01565 0.44 +0.5 260,538 + OLJFJH_01565 0.59 -0.9 260,538 + OLJFJH_01565 0.59 -2.6 260,539 - OLJFJH_01565 0.59 -2.0 260,539 - OLJFJH_01565 0.59 -0.5 260,590 - OLJFJH_01565 0.64 -0.3 260,591 + OLJFJH_01565 0.65 +0.5 260,708 - OLJFJH_01565 0.76 -1.7 260,741 + OLJFJH_01565 0.80 +0.0 260,741 + OLJFJH_01565 0.80 +1.5 260,741 + OLJFJH_01565 0.80 -2.1 260,742 - OLJFJH_01565 0.80 -1.3 260,742 - OLJFJH_01565 0.80 +1.1 260,745 + OLJFJH_01565 0.80 +0.1 260,745 + OLJFJH_01565 0.80 -0.1 260,746 - OLJFJH_01565 0.80 -0.9 260,762 + OLJFJH_01565 0.82 +1.1 260,762 + OLJFJH_01565 0.82 -1.1 260,763 - OLJFJH_01565 0.82 +0.6 260,828 + OLJFJH_01565 0.88 +2.2 260,828 + OLJFJH_01565 0.88 -2.5 260,829 - OLJFJH_01565 0.88 +0.9 260,829 - OLJFJH_01565 0.88 +0.8 260,829 - OLJFJH_01565 0.88 -1.2 260,833 + OLJFJH_01565 0.89 +0.6 260,834 - OLJFJH_01565 0.89 -0.7
Or see this region's nucleotide sequence