Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01535 and OLJFJH_01540 are separated by 201 nucleotides OLJFJH_01540 and OLJFJH_01545 are separated by 296 nucleotides
OLJFJH_01535: OLJFJH_01535 - murein transglycosylase, at 252,987 to 254,921
_01535
OLJFJH_01540: OLJFJH_01540 - hypothetical protein, at 255,123 to 255,356
_01540
OLJFJH_01545: OLJFJH_01545 - DNA-binding transcriptional repressor DeoR, at 255,653 to 256,396
_01545
Position (kb) 255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 254.130 kb on + strand, within OLJFJH_01535 at 254.217 kb on + strand, within OLJFJH_01535 at 254.218 kb on - strand, within OLJFJH_01535 at 254.252 kb on + strand, within OLJFJH_01535 at 254.291 kb on - strand, within OLJFJH_01535 at 254.515 kb on + strand, within OLJFJH_01535 at 254.522 kb on + strand, within OLJFJH_01535 at 254.522 kb on + strand, within OLJFJH_01535 at 254.523 kb on - strand, within OLJFJH_01535 at 254.813 kb on - strand at 254.964 kb on + strand at 254.964 kb on + strand at 254.965 kb on - strand at 255.007 kb on + strand at 255.008 kb on - strand at 255.073 kb on + strand at 255.105 kb on - strand at 255.139 kb on + strand at 255.139 kb on + strand at 255.139 kb on + strand at 255.140 kb on - strand at 255.154 kb on - strand, within OLJFJH_01540 at 255.174 kb on + strand, within OLJFJH_01540 at 255.174 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.300 kb on + strand, within OLJFJH_01540 at 255.301 kb on - strand, within OLJFJH_01540 at 255.412 kb on + strand at 255.413 kb on - strand at 255.413 kb on - strand at 255.468 kb on + strand at 255.468 kb on + strand at 255.469 kb on - strand at 255.469 kb on - strand at 255.469 kb on - strand at 255.469 kb on - strand at 255.527 kb on + strand at 255.528 kb on - strand at 255.617 kb on + strand at 255.645 kb on + strand at 255.646 kb on - strand at 255.646 kb on - strand at 255.646 kb on - strand at 255.680 kb on - strand at 256.208 kb on + strand, within OLJFJH_01545 at 256.208 kb on + strand, within OLJFJH_01545 at 256.211 kb on - strand, within OLJFJH_01545 at 256.224 kb on + strand, within OLJFJH_01545 at 256.261 kb on + strand, within OLJFJH_01545 at 256.262 kb on - strand, within OLJFJH_01545 at 256.262 kb on - strand, within OLJFJH_01545
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 254,130 + OLJFJH_01535 0.59 -3.2 254,217 + OLJFJH_01535 0.64 -1.5 254,218 - OLJFJH_01535 0.64 +0.5 254,252 + OLJFJH_01535 0.65 -0.6 254,291 - OLJFJH_01535 0.67 -1.5 254,515 + OLJFJH_01535 0.79 -0.9 254,522 + OLJFJH_01535 0.79 -0.8 254,522 + OLJFJH_01535 0.79 -0.2 254,523 - OLJFJH_01535 0.79 -1.1 254,813 - -0.3 254,964 + -3.5 254,964 + -1.9 254,965 - +0.1 255,007 + +0.2 255,008 - +1.6 255,073 + -1.2 255,105 - -1.0 255,139 + +1.5 255,139 + +0.2 255,139 + -0.4 255,140 - +3.0 255,154 - OLJFJH_01540 0.13 +1.0 255,174 + OLJFJH_01540 0.22 +0.6 255,174 + OLJFJH_01540 0.22 +3.5 255,300 + OLJFJH_01540 0.76 +1.6 255,300 + OLJFJH_01540 0.76 +0.4 255,300 + OLJFJH_01540 0.76 +0.7 255,300 + OLJFJH_01540 0.76 -1.0 255,300 + OLJFJH_01540 0.76 +0.7 255,300 + OLJFJH_01540 0.76 +0.3 255,301 - OLJFJH_01540 0.76 -0.9 255,412 + +0.1 255,413 - -0.5 255,413 - -0.7 255,468 + -0.8 255,468 + -1.2 255,469 - -0.2 255,469 - -1.0 255,469 - -0.5 255,469 - -1.7 255,527 + -1.6 255,528 - +0.5 255,617 + -0.8 255,645 + -1.6 255,646 - +0.8 255,646 - +0.3 255,646 - -1.0 255,680 - +0.2 256,208 + OLJFJH_01545 0.75 -0.0 256,208 + OLJFJH_01545 0.75 -0.0 256,211 - OLJFJH_01545 0.75 -0.6 256,224 + OLJFJH_01545 0.77 +1.0 256,261 + OLJFJH_01545 0.82 -0.9 256,262 - OLJFJH_01545 0.82 +0.0 256,262 - OLJFJH_01545 0.82 +2.3
Or see this region's nucleotide sequence