Strain Fitness in Erwinia amylovora T8 around OLJFJH_01520

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01510 and OLJFJH_01515 are separated by 105 nucleotidesOLJFJH_01515 and OLJFJH_01520 are separated by 207 nucleotidesOLJFJH_01520 and OLJFJH_01525 are separated by 50 nucleotidesOLJFJH_01525 and OLJFJH_01530 overlap by 15 nucleotides OLJFJH_01510: OLJFJH_01510 - MDR efflux pump AcrAB transcriptional activator RobA, at 249,779 to 250,663 _01510 OLJFJH_01515: OLJFJH_01515 - hypothetical protein, at 250,769 to 251,128 _01515 OLJFJH_01520: OLJFJH_01520 - 2 3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 251,336 to 251,983 _01520 OLJFJH_01525: OLJFJH_01525 - inosine/xanthosine triphosphatase, at 252,034 to 252,582 _01525 OLJFJH_01530: OLJFJH_01530 - trp operon repressor, at 252,568 to 252,900 _01530 Position (kb) 251 252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 250.370 kb on + strand, within OLJFJH_01510at 250.370 kb on + strand, within OLJFJH_01510at 250.370 kb on + strand, within OLJFJH_01510at 250.371 kb on - strand, within OLJFJH_01510at 250.371 kb on - strand, within OLJFJH_01510at 250.372 kb on + strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.376 kb on - strand, within OLJFJH_01510at 250.376 kb on - strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.449 kb on - strand, within OLJFJH_01510at 250.460 kb on - strand, within OLJFJH_01510at 250.463 kb on + strand, within OLJFJH_01510at 250.464 kb on - strand, within OLJFJH_01510at 250.509 kb on - strand, within OLJFJH_01510at 250.530 kb on + strand, within OLJFJH_01510at 250.530 kb on + strand, within OLJFJH_01510at 250.547 kb on - strand, within OLJFJH_01510at 250.571 kb on + strand, within OLJFJH_01510at 250.571 kb on + strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.681 kb on - strandat 250.721 kb on + strandat 250.754 kb on + strandat 250.755 kb on - strandat 250.755 kb on - strandat 250.756 kb on + strandat 250.756 kb on + strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.769 kb on - strandat 250.883 kb on + strand, within OLJFJH_01515at 250.884 kb on - strand, within OLJFJH_01515at 250.944 kb on + strand, within OLJFJH_01515at 250.957 kb on + strand, within OLJFJH_01515at 250.997 kb on - strand, within OLJFJH_01515at 251.040 kb on + strand, within OLJFJH_01515at 251.224 kb on - strandat 251.254 kb on + strandat 251.294 kb on + strandat 251.458 kb on + strand, within OLJFJH_01520at 251.459 kb on - strand, within OLJFJH_01520at 251.459 kb on - strand, within OLJFJH_01520at 251.789 kb on + strand, within OLJFJH_01520at 251.790 kb on - strand, within OLJFJH_01520at 251.970 kb on + strandat 251.971 kb on - strandat 251.971 kb on - strandat 251.979 kb on - strandat 251.998 kb on + strandat 252.033 kb on + strandat 252.033 kb on + strandat 252.033 kb on + strandat 252.033 kb on + strandat 252.033 kb on + strandat 252.033 kb on + strandat 252.034 kb on - strandat 252.034 kb on - strandat 252.034 kb on - strandat 252.034 kb on - strandat 252.037 kb on + strandat 252.037 kb on + strandat 252.345 kb on + strand, within OLJFJH_01525at 252.345 kb on + strand, within OLJFJH_01525at 252.346 kb on - strand, within OLJFJH_01525at 252.494 kb on - strand, within OLJFJH_01525at 252.494 kb on - strand, within OLJFJH_01525at 252.494 kb on - strand, within OLJFJH_01525at 252.494 kb on - strand, within OLJFJH_01525at 252.542 kb on - strandat 252.577 kb on - strandat 252.645 kb on + strand, within OLJFJH_01530at 252.735 kb on + strand, within OLJFJH_01530at 252.739 kb on + strand, within OLJFJH_01530at 252.740 kb on - strand, within OLJFJH_01530at 252.803 kb on - strand, within OLJFJH_01530at 252.803 kb on - strand, within OLJFJH_01530at 252.890 kb on + strandat 252.890 kb on + strandat 252.890 kb on + strandat 252.891 kb on - strandat 252.891 kb on - strandat 252.891 kb on - strandat 252.891 kb on - strandat 252.920 kb on - strandat 252.940 kb on + strandat 252.946 kb on + strandat 252.946 kb on + strandat 252.946 kb on + strandat 252.947 kb on - strandat 252.948 kb on + strandat 252.948 kb on + strandat 252.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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250,370 + OLJFJH_01510 0.67 -3.0
250,370 + OLJFJH_01510 0.67 -0.3
250,370 + OLJFJH_01510 0.67 +0.1
250,371 - OLJFJH_01510 0.67 -1.4
250,371 - OLJFJH_01510 0.67 -4.4
250,372 + OLJFJH_01510 0.67 -0.5
250,373 - OLJFJH_01510 0.67 -0.7
250,373 - OLJFJH_01510 0.67 -1.4
250,373 - OLJFJH_01510 0.67 +0.9
250,375 + OLJFJH_01510 0.67 -2.5
250,375 + OLJFJH_01510 0.67 -0.6
250,375 + OLJFJH_01510 0.67 +0.8
250,376 - OLJFJH_01510 0.67 +0.8
250,376 - OLJFJH_01510 0.67 -0.8
250,448 + OLJFJH_01510 0.76 +0.5
250,448 + OLJFJH_01510 0.76 -1.2
250,448 + OLJFJH_01510 0.76 -0.1
250,448 + OLJFJH_01510 0.76 -2.7
250,449 - OLJFJH_01510 0.76 +0.6
250,460 - OLJFJH_01510 0.77 -0.6
250,463 + OLJFJH_01510 0.77 +0.5
250,464 - OLJFJH_01510 0.77 -0.3
250,509 - OLJFJH_01510 0.82 -1.4
250,530 + OLJFJH_01510 0.85 +1.1
250,530 + OLJFJH_01510 0.85 -2.5
250,547 - OLJFJH_01510 0.87 +1.1
250,571 + OLJFJH_01510 0.89 +0.4
250,571 + OLJFJH_01510 0.89 -1.5
250,572 - OLJFJH_01510 0.90 -1.5
250,572 - OLJFJH_01510 0.90 -0.2
250,572 - OLJFJH_01510 0.90 -0.1
250,681 - -0.0
250,721 + -0.2
250,754 + -1.2
250,755 - -3.7
250,755 - -0.5
250,756 + -2.5
250,756 + +1.7
250,757 - +3.7
250,757 - -0.7
250,757 - +0.8
250,757 - +1.6
250,769 - -2.3
250,883 + OLJFJH_01515 0.32 +0.5
250,884 - OLJFJH_01515 0.32 +1.1
250,944 + OLJFJH_01515 0.49 +1.2
250,957 + OLJFJH_01515 0.52 +1.8
250,997 - OLJFJH_01515 0.63 -0.5
251,040 + OLJFJH_01515 0.75 -2.9
251,224 - -1.6
251,254 + -0.8
251,294 + -0.6
251,458 + OLJFJH_01520 0.19 -0.7
251,459 - OLJFJH_01520 0.19 -3.8
251,459 - OLJFJH_01520 0.19 -0.2
251,789 + OLJFJH_01520 0.70 +2.2
251,790 - OLJFJH_01520 0.70 +1.6
251,970 + -1.0
251,971 - -2.0
251,971 - -3.6
251,979 - -4.4
251,998 + -0.4
252,033 + -2.2
252,033 + +1.2
252,033 + -0.9
252,033 + +0.9
252,033 + +0.2
252,033 + -2.1
252,034 - -0.0
252,034 - +0.2
252,034 - +0.1
252,034 - -2.1
252,037 + -0.5
252,037 + +1.5
252,345 + OLJFJH_01525 0.57 +1.4
252,345 + OLJFJH_01525 0.57 -0.4
252,346 - OLJFJH_01525 0.57 +0.2
252,494 - OLJFJH_01525 0.84 -0.7
252,494 - OLJFJH_01525 0.84 +1.4
252,494 - OLJFJH_01525 0.84 -2.3
252,494 - OLJFJH_01525 0.84 -4.1
252,542 - +1.0
252,577 - -0.7
252,645 + OLJFJH_01530 0.23 -1.2
252,735 + OLJFJH_01530 0.50 +0.2
252,739 + OLJFJH_01530 0.51 -0.0
252,740 - OLJFJH_01530 0.52 -0.4
252,803 - OLJFJH_01530 0.71 -1.0
252,803 - OLJFJH_01530 0.71 +0.2
252,890 + -2.3
252,890 + +0.0
252,890 + +0.5
252,891 - +1.7
252,891 - -1.9
252,891 - +0.5
252,891 - -0.7
252,920 - +1.3
252,940 + +3.1
252,946 + -2.3
252,946 + -0.4
252,946 + +0.7
252,947 - -0.4
252,948 + -2.8
252,948 + +0.3
252,949 - -0.1

Or see this region's nucleotide sequence