Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01510 and OLJFJH_01515 are separated by 105 nucleotides OLJFJH_01515 and OLJFJH_01520 are separated by 207 nucleotides OLJFJH_01520 and OLJFJH_01525 are separated by 50 nucleotides OLJFJH_01525 and OLJFJH_01530 overlap by 15 nucleotides
OLJFJH_01510: OLJFJH_01510 - MDR efflux pump AcrAB transcriptional activator RobA, at 249,779 to 250,663
_01510
OLJFJH_01515: OLJFJH_01515 - hypothetical protein, at 250,769 to 251,128
_01515
OLJFJH_01520: OLJFJH_01520 - 2 3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 251,336 to 251,983
_01520
OLJFJH_01525: OLJFJH_01525 - inosine/xanthosine triphosphatase, at 252,034 to 252,582
_01525
OLJFJH_01530: OLJFJH_01530 - trp operon repressor, at 252,568 to 252,900
_01530
Position (kb)
251
252 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 250.370 kb on + strand, within OLJFJH_01510 at 250.370 kb on + strand, within OLJFJH_01510 at 250.370 kb on + strand, within OLJFJH_01510 at 250.371 kb on - strand, within OLJFJH_01510 at 250.371 kb on - strand, within OLJFJH_01510 at 250.372 kb on + strand, within OLJFJH_01510 at 250.373 kb on - strand, within OLJFJH_01510 at 250.373 kb on - strand, within OLJFJH_01510 at 250.373 kb on - strand, within OLJFJH_01510 at 250.375 kb on + strand, within OLJFJH_01510 at 250.375 kb on + strand, within OLJFJH_01510 at 250.375 kb on + strand, within OLJFJH_01510 at 250.376 kb on - strand, within OLJFJH_01510 at 250.376 kb on - strand, within OLJFJH_01510 at 250.448 kb on + strand, within OLJFJH_01510 at 250.448 kb on + strand, within OLJFJH_01510 at 250.448 kb on + strand, within OLJFJH_01510 at 250.448 kb on + strand, within OLJFJH_01510 at 250.449 kb on - strand, within OLJFJH_01510 at 250.460 kb on - strand, within OLJFJH_01510 at 250.463 kb on + strand, within OLJFJH_01510 at 250.464 kb on - strand, within OLJFJH_01510 at 250.509 kb on - strand, within OLJFJH_01510 at 250.530 kb on + strand, within OLJFJH_01510 at 250.530 kb on + strand, within OLJFJH_01510 at 250.547 kb on - strand, within OLJFJH_01510 at 250.571 kb on + strand, within OLJFJH_01510 at 250.571 kb on + strand, within OLJFJH_01510 at 250.572 kb on - strand, within OLJFJH_01510 at 250.572 kb on - strand, within OLJFJH_01510 at 250.572 kb on - strand, within OLJFJH_01510 at 250.681 kb on - strand at 250.721 kb on + strand at 250.754 kb on + strand at 250.755 kb on - strand at 250.755 kb on - strand at 250.756 kb on + strand at 250.756 kb on + strand at 250.757 kb on - strand at 250.757 kb on - strand at 250.757 kb on - strand at 250.757 kb on - strand at 250.769 kb on - strand at 250.883 kb on + strand, within OLJFJH_01515 at 250.884 kb on - strand, within OLJFJH_01515 at 250.944 kb on + strand, within OLJFJH_01515 at 250.957 kb on + strand, within OLJFJH_01515 at 250.997 kb on - strand, within OLJFJH_01515 at 251.040 kb on + strand, within OLJFJH_01515 at 251.224 kb on - strand at 251.254 kb on + strand at 251.294 kb on + strand at 251.458 kb on + strand, within OLJFJH_01520 at 251.459 kb on - strand, within OLJFJH_01520 at 251.459 kb on - strand, within OLJFJH_01520 at 251.789 kb on + strand, within OLJFJH_01520 at 251.790 kb on - strand, within OLJFJH_01520 at 251.970 kb on + strand at 251.971 kb on - strand at 251.971 kb on - strand at 251.979 kb on - strand at 251.998 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.037 kb on + strand at 252.037 kb on + strand at 252.345 kb on + strand, within OLJFJH_01525 at 252.345 kb on + strand, within OLJFJH_01525 at 252.346 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.542 kb on - strand at 252.577 kb on - strand at 252.645 kb on + strand, within OLJFJH_01530 at 252.735 kb on + strand, within OLJFJH_01530 at 252.739 kb on + strand, within OLJFJH_01530 at 252.740 kb on - strand, within OLJFJH_01530 at 252.803 kb on - strand, within OLJFJH_01530 at 252.803 kb on - strand, within OLJFJH_01530 at 252.890 kb on + strand at 252.890 kb on + strand at 252.890 kb on + strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.920 kb on - strand at 252.940 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.947 kb on - strand at 252.948 kb on + strand at 252.948 kb on + strand at 252.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 250,370 + OLJFJH_01510 0.67 -3.0 250,370 + OLJFJH_01510 0.67 -0.3 250,370 + OLJFJH_01510 0.67 +0.1 250,371 - OLJFJH_01510 0.67 -1.4 250,371 - OLJFJH_01510 0.67 -4.4 250,372 + OLJFJH_01510 0.67 -0.5 250,373 - OLJFJH_01510 0.67 -0.7 250,373 - OLJFJH_01510 0.67 -1.4 250,373 - OLJFJH_01510 0.67 +0.9 250,375 + OLJFJH_01510 0.67 -2.5 250,375 + OLJFJH_01510 0.67 -0.6 250,375 + OLJFJH_01510 0.67 +0.8 250,376 - OLJFJH_01510 0.67 +0.8 250,376 - OLJFJH_01510 0.67 -0.8 250,448 + OLJFJH_01510 0.76 +0.5 250,448 + OLJFJH_01510 0.76 -1.2 250,448 + OLJFJH_01510 0.76 -0.1 250,448 + OLJFJH_01510 0.76 -2.7 250,449 - OLJFJH_01510 0.76 +0.6 250,460 - OLJFJH_01510 0.77 -0.6 250,463 + OLJFJH_01510 0.77 +0.5 250,464 - OLJFJH_01510 0.77 -0.3 250,509 - OLJFJH_01510 0.82 -1.4 250,530 + OLJFJH_01510 0.85 +1.1 250,530 + OLJFJH_01510 0.85 -2.5 250,547 - OLJFJH_01510 0.87 +1.1 250,571 + OLJFJH_01510 0.89 +0.4 250,571 + OLJFJH_01510 0.89 -1.5 250,572 - OLJFJH_01510 0.90 -1.5 250,572 - OLJFJH_01510 0.90 -0.2 250,572 - OLJFJH_01510 0.90 -0.1 250,681 - -0.0 250,721 + -0.2 250,754 + -1.2 250,755 - -3.7 250,755 - -0.5 250,756 + -2.5 250,756 + +1.7 250,757 - +3.7 250,757 - -0.7 250,757 - +0.8 250,757 - +1.6 250,769 - -2.3 250,883 + OLJFJH_01515 0.32 +0.5 250,884 - OLJFJH_01515 0.32 +1.1 250,944 + OLJFJH_01515 0.49 +1.2 250,957 + OLJFJH_01515 0.52 +1.8 250,997 - OLJFJH_01515 0.63 -0.5 251,040 + OLJFJH_01515 0.75 -2.9 251,224 - -1.6 251,254 + -0.8 251,294 + -0.6 251,458 + OLJFJH_01520 0.19 -0.7 251,459 - OLJFJH_01520 0.19 -3.8 251,459 - OLJFJH_01520 0.19 -0.2 251,789 + OLJFJH_01520 0.70 +2.2 251,790 - OLJFJH_01520 0.70 +1.6 251,970 + -1.0 251,971 - -2.0 251,971 - -3.6 251,979 - -4.4 251,998 + -0.4 252,033 + -2.2 252,033 + +1.2 252,033 + -0.9 252,033 + +0.9 252,033 + +0.2 252,033 + -2.1 252,034 - -0.0 252,034 - +0.2 252,034 - +0.1 252,034 - -2.1 252,037 + -0.5 252,037 + +1.5 252,345 + OLJFJH_01525 0.57 +1.4 252,345 + OLJFJH_01525 0.57 -0.4 252,346 - OLJFJH_01525 0.57 +0.2 252,494 - OLJFJH_01525 0.84 -0.7 252,494 - OLJFJH_01525 0.84 +1.4 252,494 - OLJFJH_01525 0.84 -2.3 252,494 - OLJFJH_01525 0.84 -4.1 252,542 - +1.0 252,577 - -0.7 252,645 + OLJFJH_01530 0.23 -1.2 252,735 + OLJFJH_01530 0.50 +0.2 252,739 + OLJFJH_01530 0.51 -0.0 252,740 - OLJFJH_01530 0.52 -0.4 252,803 - OLJFJH_01530 0.71 -1.0 252,803 - OLJFJH_01530 0.71 +0.2 252,890 + -2.3 252,890 + +0.0 252,890 + +0.5 252,891 - +1.7 252,891 - -1.9 252,891 - +0.5 252,891 - -0.7 252,920 - +1.3 252,940 + +3.1 252,946 + -2.3 252,946 + -0.4 252,946 + +0.7 252,947 - -0.4 252,948 + -2.8 252,948 + +0.3 252,949 - -0.1
Or see this region's nucleotide sequence