Strain Fitness in Erwinia amylovora T8 around OLJFJH_01470

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01465 and OLJFJH_01470 are separated by 127 nucleotidesOLJFJH_01470 and OLJFJH_01475 are separated by 225 nucleotides OLJFJH_01465: OLJFJH_01465 - acyltransferase, at 238,361 to 239,512 _01465 OLJFJH_01470: OLJFJH_01470 - molybdopterin adenylyltransferase, at 239,640 to 240,197 _01470 OLJFJH_01475: OLJFJH_01475 - transaldolase B, at 240,423 to 241,376 _01475 Position (kb) 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 238.641 kb on + strand, within OLJFJH_01465at 238.651 kb on + strand, within OLJFJH_01465at 238.691 kb on - strand, within OLJFJH_01465at 238.757 kb on - strand, within OLJFJH_01465at 238.762 kb on + strand, within OLJFJH_01465at 238.919 kb on - strand, within OLJFJH_01465at 238.921 kb on + strand, within OLJFJH_01465at 238.922 kb on - strand, within OLJFJH_01465at 238.922 kb on - strand, within OLJFJH_01465at 238.922 kb on - strand, within OLJFJH_01465at 239.104 kb on + strand, within OLJFJH_01465at 239.353 kb on + strand, within OLJFJH_01465at 239.405 kb on + strandat 239.405 kb on + strandat 239.466 kb on - strandat 239.541 kb on + strandat 239.711 kb on - strand, within OLJFJH_01470at 239.754 kb on + strand, within OLJFJH_01470at 239.837 kb on + strand, within OLJFJH_01470at 239.855 kb on + strand, within OLJFJH_01470at 239.860 kb on - strand, within OLJFJH_01470at 240.169 kb on + strandat 240.169 kb on + strandat 240.169 kb on + strandat 240.170 kb on - strandat 240.210 kb on + strandat 240.211 kb on - strandat 240.211 kb on - strandat 240.211 kb on - strandat 240.216 kb on + strandat 240.228 kb on - strandat 240.244 kb on - strandat 240.266 kb on + strandat 240.273 kb on + strandat 240.277 kb on + strandat 240.277 kb on + strandat 240.277 kb on + strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.278 kb on - strandat 240.288 kb on + strandat 240.289 kb on - strandat 240.375 kb on - strandat 240.389 kb on + strandat 240.390 kb on - strandat 240.410 kb on + strandat 240.410 kb on + strandat 240.430 kb on - strandat 240.430 kb on - strandat 240.570 kb on + strand, within OLJFJH_01475at 240.571 kb on - strand, within OLJFJH_01475at 240.647 kb on + strand, within OLJFJH_01475at 240.648 kb on - strand, within OLJFJH_01475at 240.740 kb on - strand, within OLJFJH_01475at 240.740 kb on - strand, within OLJFJH_01475at 240.743 kb on - strand, within OLJFJH_01475at 240.818 kb on + strand, within OLJFJH_01475at 240.818 kb on + strand, within OLJFJH_01475at 240.820 kb on + strand, within OLJFJH_01475at 240.821 kb on - strand, within OLJFJH_01475at 240.821 kb on - strand, within OLJFJH_01475at 241.020 kb on - strand, within OLJFJH_01475at 241.022 kb on - strand, within OLJFJH_01475at 241.022 kb on - strand, within OLJFJH_01475at 241.069 kb on + strand, within OLJFJH_01475at 241.069 kb on + strand, within OLJFJH_01475at 241.070 kb on - strand, within OLJFJH_01475at 241.101 kb on - strand, within OLJFJH_01475at 241.181 kb on + strand, within OLJFJH_01475at 241.182 kb on - strand, within OLJFJH_01475at 241.182 kb on - strand, within OLJFJH_01475

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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238,641 + OLJFJH_01465 0.24 +1.0
238,651 + OLJFJH_01465 0.25 +0.1
238,691 - OLJFJH_01465 0.29 -0.6
238,757 - OLJFJH_01465 0.34 -1.0
238,762 + OLJFJH_01465 0.35 +0.4
238,919 - OLJFJH_01465 0.48 -2.9
238,921 + OLJFJH_01465 0.49 +1.0
238,922 - OLJFJH_01465 0.49 -0.5
238,922 - OLJFJH_01465 0.49 -0.1
238,922 - OLJFJH_01465 0.49 +0.3
239,104 + OLJFJH_01465 0.64 -0.2
239,353 + OLJFJH_01465 0.86 +0.3
239,405 + -4.1
239,405 + -1.3
239,466 - -0.8
239,541 + +0.5
239,711 - OLJFJH_01470 0.13 +0.9
239,754 + OLJFJH_01470 0.20 +0.8
239,837 + OLJFJH_01470 0.35 -1.9
239,855 + OLJFJH_01470 0.39 -1.5
239,860 - OLJFJH_01470 0.39 +1.8
240,169 + -0.4
240,169 + +0.6
240,169 + -0.7
240,170 - -2.3
240,210 + +0.1
240,211 - -0.4
240,211 - -1.3
240,211 - -0.6
240,216 + +0.7
240,228 - +0.5
240,244 - +0.8
240,266 + -0.1
240,273 + -3.9
240,277 + +1.0
240,277 + +0.7
240,277 + -1.5
240,278 - -0.5
240,278 - -1.3
240,278 - +0.1
240,278 - +0.5
240,288 + -2.2
240,289 - -1.3
240,375 - +0.4
240,389 + -0.6
240,390 - -1.1
240,410 + -2.1
240,410 + -0.4
240,430 - +1.4
240,430 - -2.1
240,570 + OLJFJH_01475 0.15 +0.3
240,571 - OLJFJH_01475 0.16 -1.4
240,647 + OLJFJH_01475 0.23 -2.0
240,648 - OLJFJH_01475 0.24 -1.0
240,740 - OLJFJH_01475 0.33 +0.5
240,740 - OLJFJH_01475 0.33 -0.7
240,743 - OLJFJH_01475 0.34 -1.2
240,818 + OLJFJH_01475 0.41 -2.8
240,818 + OLJFJH_01475 0.41 -2.9
240,820 + OLJFJH_01475 0.42 -0.7
240,821 - OLJFJH_01475 0.42 +0.2
240,821 - OLJFJH_01475 0.42 -0.7
241,020 - OLJFJH_01475 0.63 -1.2
241,022 - OLJFJH_01475 0.63 -3.6
241,022 - OLJFJH_01475 0.63 +0.6
241,069 + OLJFJH_01475 0.68 -0.1
241,069 + OLJFJH_01475 0.68 -0.2
241,070 - OLJFJH_01475 0.68 -0.8
241,101 - OLJFJH_01475 0.71 +0.1
241,181 + OLJFJH_01475 0.79 +0.3
241,182 - OLJFJH_01475 0.80 -0.4
241,182 - OLJFJH_01475 0.80 -0.6

Or see this region's nucleotide sequence