Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01380 and OLJFJH_01385 are separated by 41 nucleotides OLJFJH_01385 and OLJFJH_01390 are separated by 189 nucleotides OLJFJH_01390 and OLJFJH_01395 are separated by 132 nucleotides
OLJFJH_01380: OLJFJH_01380 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 218,263 to 219,087
_01380
OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611
_01385
OLJFJH_01390: OLJFJH_01390 - lysine transporter LysE, at 219,801 to 220,415
_01390
OLJFJH_01395: OLJFJH_01395 - carbamoyl-phosphate synthase large subunit, at 220,548 to 223,772
_01395
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 218.816 kb on - strand, within OLJFJH_01380 at 218.923 kb on + strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 219.085 kb on + strand at 219.085 kb on + strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.648 kb on - strand at 219.648 kb on - strand at 219.648 kb on - strand at 219.651 kb on + strand at 219.651 kb on + strand at 219.686 kb on + strand at 219.691 kb on - strand at 219.691 kb on - strand at 219.711 kb on - strand at 219.800 kb on + strand at 219.800 kb on + strand at 219.801 kb on - strand at 219.801 kb on - strand at 219.818 kb on - strand at 220.111 kb on + strand, within OLJFJH_01390 at 220.205 kb on + strand, within OLJFJH_01390 at 220.252 kb on - strand, within OLJFJH_01390 at 220.252 kb on - strand, within OLJFJH_01390 at 220.325 kb on - strand, within OLJFJH_01390 at 220.341 kb on - strand, within OLJFJH_01390 at 220.341 kb on - strand, within OLJFJH_01390 at 220.497 kb on + strand at 220.497 kb on + strand at 220.498 kb on - strand at 220.498 kb on - strand at 220.498 kb on - strand at 220.550 kb on - strand at 220.642 kb on - strand at 220.666 kb on + strand at 220.667 kb on - strand at 220.667 kb on - strand at 220.667 kb on - strand at 220.736 kb on + strand at 220.736 kb on + strand at 220.736 kb on + strand at 220.736 kb on + strand at 220.736 kb on + strand at 220.737 kb on - strand at 220.737 kb on - strand at 220.737 kb on - strand at 220.737 kb on - strand at 220.738 kb on + strand at 220.738 kb on + strand at 220.738 kb on + strand at 220.738 kb on + strand at 220.739 kb on - strand at 220.739 kb on - strand at 220.772 kb on + strand at 220.773 kb on - strand at 220.809 kb on + strand at 220.904 kb on + strand, within OLJFJH_01395 at 220.959 kb on - strand, within OLJFJH_01395 at 221.022 kb on + strand, within OLJFJH_01395 at 221.023 kb on - strand, within OLJFJH_01395 at 221.023 kb on - strand, within OLJFJH_01395 at 221.261 kb on - strand, within OLJFJH_01395 at 221.376 kb on - strand, within OLJFJH_01395
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 218,816 - OLJFJH_01380 0.67 +0.5 218,923 + OLJFJH_01380 0.80 -0.9 218,924 - OLJFJH_01380 0.80 -0.3 218,924 - OLJFJH_01380 0.80 -1.0 219,085 + +0.6 219,085 + -1.1 219,614 - -0.5 219,614 - +0.5 219,648 - +0.3 219,648 - +0.5 219,648 - +0.9 219,651 + +1.0 219,651 + -1.3 219,686 + +1.1 219,691 - +2.1 219,691 - -0.2 219,711 - -1.3 219,800 + -1.1 219,800 + -0.5 219,801 - -0.6 219,801 - +0.2 219,818 - -0.7 220,111 + OLJFJH_01390 0.50 -0.7 220,205 + OLJFJH_01390 0.66 +2.5 220,252 - OLJFJH_01390 0.73 +1.9 220,252 - OLJFJH_01390 0.73 -0.4 220,325 - OLJFJH_01390 0.85 +1.7 220,341 - OLJFJH_01390 0.88 -1.3 220,341 - OLJFJH_01390 0.88 +1.1 220,497 + -0.3 220,497 + -0.3 220,498 - -2.1 220,498 - +0.6 220,498 - +0.2 220,550 - -0.4 220,642 - +0.2 220,666 + -0.3 220,667 - -0.2 220,667 - +1.4 220,667 - -1.5 220,736 + -0.7 220,736 + -3.4 220,736 + -0.1 220,736 + -2.7 220,736 + -0.1 220,737 - -0.2 220,737 - -1.3 220,737 - +0.9 220,737 - +0.1 220,738 + -0.1 220,738 + +0.9 220,738 + +0.5 220,738 + +0.8 220,739 - +0.0 220,739 - +1.6 220,772 + +0.5 220,773 - -2.9 220,809 + -0.5 220,904 + OLJFJH_01395 0.11 -2.8 220,959 - OLJFJH_01395 0.13 -1.8 221,022 + OLJFJH_01395 0.15 -1.4 221,023 - OLJFJH_01395 0.15 +0.1 221,023 - OLJFJH_01395 0.15 +0.8 221,261 - OLJFJH_01395 0.22 +0.1 221,376 - OLJFJH_01395 0.26 -3.1
Or see this region's nucleotide sequence