Strain Fitness in Erwinia amylovora T8 around OLJFJH_01165

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01155 and OLJFJH_01160 overlap by 11 nucleotidesOLJFJH_01160 and OLJFJH_01165 are separated by 117 nucleotidesOLJFJH_01165 and OLJFJH_01170 are separated by 297 nucleotides OLJFJH_01155: OLJFJH_01155 - type II secretion system protein, at 162,100 to 162,558 _01155 OLJFJH_01160: OLJFJH_01160 - prepilin peptidase, at 162,548 to 163,336 _01160 OLJFJH_01165: OLJFJH_01165 - type II secretion system pilot lipoprotein GspS, at 163,454 to 163,840 _01165 OLJFJH_01170: OLJFJH_01170 - N-acetylglucosamine-binding protein GbpA, at 164,138 to 165,577 _01170 Position (kb) 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 162.535 kb on - strandat 162.535 kb on - strandat 162.543 kb on + strandat 162.543 kb on + strandat 162.567 kb on - strandat 162.627 kb on - strand, within OLJFJH_01160at 162.706 kb on + strand, within OLJFJH_01160at 162.706 kb on + strand, within OLJFJH_01160at 162.706 kb on + strand, within OLJFJH_01160at 162.707 kb on - strand, within OLJFJH_01160at 162.760 kb on + strand, within OLJFJH_01160at 162.760 kb on + strand, within OLJFJH_01160at 162.895 kb on + strand, within OLJFJH_01160at 162.896 kb on - strand, within OLJFJH_01160at 163.059 kb on + strand, within OLJFJH_01160at 163.059 kb on + strand, within OLJFJH_01160at 163.059 kb on + strand, within OLJFJH_01160at 163.059 kb on + strand, within OLJFJH_01160at 163.060 kb on - strand, within OLJFJH_01160at 163.103 kb on - strand, within OLJFJH_01160at 163.207 kb on + strand, within OLJFJH_01160at 163.456 kb on - strandat 163.468 kb on - strandat 163.475 kb on - strandat 163.591 kb on + strand, within OLJFJH_01165at 163.660 kb on + strand, within OLJFJH_01165at 163.860 kb on + strandat 163.860 kb on + strandat 163.861 kb on - strandat 163.861 kb on - strandat 163.894 kb on - strandat 163.907 kb on - strandat 163.932 kb on + strandat 164.003 kb on - strandat 164.005 kb on - strandat 164.104 kb on - strandat 164.108 kb on - strandat 164.108 kb on - strandat 164.109 kb on + strandat 164.109 kb on + strandat 164.110 kb on - strandat 164.110 kb on - strandat 164.113 kb on + strandat 164.114 kb on - strandat 164.114 kb on - strandat 164.114 kb on - strandat 164.114 kb on - strandat 164.170 kb on + strandat 164.173 kb on + strandat 164.174 kb on - strandat 164.174 kb on - strandat 164.179 kb on - strandat 164.286 kb on + strand, within OLJFJH_01170at 164.287 kb on - strand, within OLJFJH_01170at 164.296 kb on + strand, within OLJFJH_01170at 164.296 kb on + strand, within OLJFJH_01170at 164.296 kb on + strand, within OLJFJH_01170at 164.401 kb on - strand, within OLJFJH_01170at 164.498 kb on + strand, within OLJFJH_01170at 164.499 kb on - strand, within OLJFJH_01170at 164.504 kb on - strand, within OLJFJH_01170at 164.504 kb on - strand, within OLJFJH_01170at 164.506 kb on + strand, within OLJFJH_01170at 164.507 kb on - strand, within OLJFJH_01170at 164.527 kb on + strand, within OLJFJH_01170at 164.528 kb on - strand, within OLJFJH_01170at 164.530 kb on + strand, within OLJFJH_01170at 164.531 kb on - strand, within OLJFJH_01170at 164.531 kb on - strand, within OLJFJH_01170at 164.573 kb on - strand, within OLJFJH_01170at 164.573 kb on - strand, within OLJFJH_01170at 164.657 kb on + strand, within OLJFJH_01170at 164.657 kb on + strand, within OLJFJH_01170at 164.696 kb on + strand, within OLJFJH_01170at 164.696 kb on + strand, within OLJFJH_01170at 164.697 kb on - strand, within OLJFJH_01170at 164.697 kb on - strand, within OLJFJH_01170at 164.697 kb on - strand, within OLJFJH_01170at 164.699 kb on - strand, within OLJFJH_01170at 164.771 kb on + strand, within OLJFJH_01170at 164.771 kb on + strand, within OLJFJH_01170at 164.771 kb on + strand, within OLJFJH_01170at 164.771 kb on + strand, within OLJFJH_01170at 164.772 kb on - strand, within OLJFJH_01170at 164.772 kb on - strand, within OLJFJH_01170at 164.772 kb on - strand, within OLJFJH_01170at 164.774 kb on - strand, within OLJFJH_01170at 164.774 kb on - strand, within OLJFJH_01170at 164.774 kb on - strand, within OLJFJH_01170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
162,535 - +0.5
162,535 - +0.1
162,543 + -0.6
162,543 + +0.8
162,567 - +0.6
162,627 - OLJFJH_01160 0.10 +1.3
162,706 + OLJFJH_01160 0.20 -3.7
162,706 + OLJFJH_01160 0.20 -0.1
162,706 + OLJFJH_01160 0.20 -0.2
162,707 - OLJFJH_01160 0.20 +0.1
162,760 + OLJFJH_01160 0.27 +0.5
162,760 + OLJFJH_01160 0.27 -0.6
162,895 + OLJFJH_01160 0.44 +1.0
162,896 - OLJFJH_01160 0.44 +0.9
163,059 + OLJFJH_01160 0.65 +0.4
163,059 + OLJFJH_01160 0.65 -1.2
163,059 + OLJFJH_01160 0.65 +0.5
163,059 + OLJFJH_01160 0.65 +0.1
163,060 - OLJFJH_01160 0.65 -3.2
163,103 - OLJFJH_01160 0.70 +0.3
163,207 + OLJFJH_01160 0.84 -0.1
163,456 - -0.2
163,468 - -1.9
163,475 - -1.5
163,591 + OLJFJH_01165 0.35 +0.8
163,660 + OLJFJH_01165 0.53 +1.1
163,860 + +1.3
163,860 + +0.4
163,861 - +0.8
163,861 - -0.1
163,894 - +0.0
163,907 - +0.6
163,932 + -0.8
164,003 - +2.0
164,005 - +2.3
164,104 - +0.3
164,108 - +0.5
164,108 - +0.2
164,109 + +0.5
164,109 + +0.7
164,110 - +0.2
164,110 - +1.0
164,113 + -0.2
164,114 - +0.4
164,114 - -0.3
164,114 - +0.6
164,114 - +0.4
164,170 + -0.1
164,173 + -1.2
164,174 - -3.0
164,174 - -0.3
164,179 - +0.4
164,286 + OLJFJH_01170 0.10 +0.4
164,287 - OLJFJH_01170 0.10 +0.1
164,296 + OLJFJH_01170 0.11 +0.5
164,296 + OLJFJH_01170 0.11 -0.8
164,296 + OLJFJH_01170 0.11 -2.8
164,401 - OLJFJH_01170 0.18 -0.5
164,498 + OLJFJH_01170 0.25 +0.7
164,499 - OLJFJH_01170 0.25 +1.3
164,504 - OLJFJH_01170 0.25 +0.9
164,504 - OLJFJH_01170 0.25 -1.7
164,506 + OLJFJH_01170 0.26 -2.9
164,507 - OLJFJH_01170 0.26 -0.2
164,527 + OLJFJH_01170 0.27 -0.1
164,528 - OLJFJH_01170 0.27 -0.5
164,530 + OLJFJH_01170 0.27 -1.2
164,531 - OLJFJH_01170 0.27 -1.3
164,531 - OLJFJH_01170 0.27 +1.0
164,573 - OLJFJH_01170 0.30 -0.6
164,573 - OLJFJH_01170 0.30 -2.8
164,657 + OLJFJH_01170 0.36 -1.2
164,657 + OLJFJH_01170 0.36 +1.3
164,696 + OLJFJH_01170 0.39 +0.4
164,696 + OLJFJH_01170 0.39 +1.8
164,697 - OLJFJH_01170 0.39 +0.2
164,697 - OLJFJH_01170 0.39 -2.7
164,697 - OLJFJH_01170 0.39 -0.9
164,699 - OLJFJH_01170 0.39 +1.1
164,771 + OLJFJH_01170 0.44 +0.0
164,771 + OLJFJH_01170 0.44 -2.8
164,771 + OLJFJH_01170 0.44 +1.8
164,771 + OLJFJH_01170 0.44 +0.6
164,772 - OLJFJH_01170 0.44 +0.4
164,772 - OLJFJH_01170 0.44 +1.3
164,772 - OLJFJH_01170 0.44 +0.2
164,774 - OLJFJH_01170 0.44 -1.9
164,774 - OLJFJH_01170 0.44 -1.4
164,774 - OLJFJH_01170 0.44 -1.8

Or see this region's nucleotide sequence