Strain Fitness in Erwinia amylovora T8 around OLJFJH_01000

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00990 and OLJFJH_01000 are separated by 145 nucleotidesOLJFJH_01000 and OLJFJH_01005 are separated by 613 nucleotides OLJFJH_00990: OLJFJH_00990 - pyruvate dehydrogenase (acetyl-transferring) homodimeric type, at 122,363 to 125,026 _00990 OLJFJH_01000: OLJFJH_01000 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 125,172 to 125,936 _01000 OLJFJH_01005: OLJFJH_01005 - aromatic amino acid transporter AroP, at 126,550 to 127,905 _01005 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 124.677 kb on - strand, within OLJFJH_00990at 124.677 kb on - strand, within OLJFJH_00990at 125.135 kb on - strandat 125.148 kb on - strandat 125.162 kb on + strandat 125.244 kb on + strandat 125.245 kb on - strandat 125.245 kb on - strandat 125.245 kb on - strandat 125.245 kb on - strandat 125.372 kb on - strand, within OLJFJH_01000at 125.372 kb on - strand, within OLJFJH_01000at 125.372 kb on - strand, within OLJFJH_01000at 125.472 kb on + strand, within OLJFJH_01000at 125.473 kb on - strand, within OLJFJH_01000at 125.473 kb on - strand, within OLJFJH_01000at 125.538 kb on - strand, within OLJFJH_01000at 125.558 kb on + strand, within OLJFJH_01000at 125.600 kb on - strand, within OLJFJH_01000at 125.635 kb on - strand, within OLJFJH_01000at 125.948 kb on + strandat 125.977 kb on - strandat 126.000 kb on - strandat 126.012 kb on + strandat 126.064 kb on - strandat 126.083 kb on + strandat 126.085 kb on + strandat 126.085 kb on + strandat 126.086 kb on - strandat 126.178 kb on - strandat 126.273 kb on + strandat 126.273 kb on + strandat 126.274 kb on - strandat 126.274 kb on - strandat 126.275 kb on + strandat 126.276 kb on - strandat 126.276 kb on - strandat 126.276 kb on - strandat 126.276 kb on - strandat 126.277 kb on + strandat 126.277 kb on + strandat 126.277 kb on + strandat 126.277 kb on + strandat 126.277 kb on + strandat 126.277 kb on + strandat 126.278 kb on - strandat 126.278 kb on - strandat 126.308 kb on + strandat 126.345 kb on + strandat 126.349 kb on + strandat 126.480 kb on + strandat 126.480 kb on + strandat 126.480 kb on + strandat 126.480 kb on + strandat 126.532 kb on + strandat 126.532 kb on + strandat 126.533 kb on - strandat 126.534 kb on + strandat 126.534 kb on + strandat 126.534 kb on + strandat 126.535 kb on - strandat 126.535 kb on - strandat 126.549 kb on + strandat 126.793 kb on + strand, within OLJFJH_01005at 126.795 kb on + strand, within OLJFJH_01005at 126.795 kb on + strand, within OLJFJH_01005at 126.795 kb on + strand, within OLJFJH_01005at 126.796 kb on - strand, within OLJFJH_01005at 126.799 kb on + strand, within OLJFJH_01005at 126.800 kb on - strand, within OLJFJH_01005at 126.800 kb on - strand, within OLJFJH_01005at 126.838 kb on + strand, within OLJFJH_01005at 126.850 kb on + strand, within OLJFJH_01005at 126.851 kb on - strand, within OLJFJH_01005at 126.851 kb on - strand, within OLJFJH_01005at 126.889 kb on - strand, within OLJFJH_01005at 126.892 kb on + strand, within OLJFJH_01005at 126.892 kb on + strand, within OLJFJH_01005at 126.893 kb on - strand, within OLJFJH_01005at 126.893 kb on - strand, within OLJFJH_01005at 126.893 kb on - strand, within OLJFJH_01005at 126.894 kb on + strand, within OLJFJH_01005at 126.894 kb on + strand, within OLJFJH_01005at 126.895 kb on - strand, within OLJFJH_01005at 126.895 kb on - strand, within OLJFJH_01005at 126.896 kb on + strand, within OLJFJH_01005at 126.896 kb on + strand, within OLJFJH_01005at 126.896 kb on + strand, within OLJFJH_01005at 126.897 kb on - strand, within OLJFJH_01005at 126.897 kb on - strand, within OLJFJH_01005at 126.897 kb on - strand, within OLJFJH_01005

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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124,677 - OLJFJH_00990 0.87 +4.0
124,677 - OLJFJH_00990 0.87 +0.5
125,135 - -0.0
125,148 - +0.3
125,162 + -0.2
125,244 + +0.3
125,245 - +0.8
125,245 - -0.4
125,245 - -1.2
125,245 - +0.1
125,372 - OLJFJH_01000 0.26 +2.3
125,372 - OLJFJH_01000 0.26 -0.7
125,372 - OLJFJH_01000 0.26 -0.7
125,472 + OLJFJH_01000 0.39 -0.2
125,473 - OLJFJH_01000 0.39 -1.7
125,473 - OLJFJH_01000 0.39 -2.2
125,538 - OLJFJH_01000 0.48 +1.9
125,558 + OLJFJH_01000 0.50 +3.3
125,600 - OLJFJH_01000 0.56 +0.9
125,635 - OLJFJH_01000 0.61 +1.2
125,948 + +1.1
125,977 - -1.0
126,000 - -0.0
126,012 + -1.3
126,064 - +0.0
126,083 + +0.1
126,085 + -0.1
126,085 + +0.2
126,086 - -0.8
126,178 - +1.2
126,273 + -1.5
126,273 + +1.4
126,274 - +0.1
126,274 - -2.3
126,275 + +1.0
126,276 - +0.8
126,276 - -1.6
126,276 - -1.1
126,276 - +1.1
126,277 + -0.6
126,277 + -0.4
126,277 + -0.0
126,277 + +0.2
126,277 + -0.2
126,277 + +0.7
126,278 - +1.1
126,278 - -2.8
126,308 + +1.5
126,345 + +0.4
126,349 + +1.4
126,480 + -0.3
126,480 + +0.6
126,480 + -0.9
126,480 + +2.2
126,532 + +0.3
126,532 + -0.2
126,533 - -2.2
126,534 + +1.9
126,534 + -0.2
126,534 + -0.6
126,535 - -3.1
126,535 - -0.3
126,549 + +0.0
126,793 + OLJFJH_01005 0.18 +0.1
126,795 + OLJFJH_01005 0.18 -0.2
126,795 + OLJFJH_01005 0.18 +1.3
126,795 + OLJFJH_01005 0.18 +0.8
126,796 - OLJFJH_01005 0.18 +2.8
126,799 + OLJFJH_01005 0.18 +0.6
126,800 - OLJFJH_01005 0.18 -0.5
126,800 - OLJFJH_01005 0.18 -2.4
126,838 + OLJFJH_01005 0.21 -0.5
126,850 + OLJFJH_01005 0.22 -0.8
126,851 - OLJFJH_01005 0.22 +0.9
126,851 - OLJFJH_01005 0.22 -2.3
126,889 - OLJFJH_01005 0.25 -0.3
126,892 + OLJFJH_01005 0.25 -0.5
126,892 + OLJFJH_01005 0.25 -0.7
126,893 - OLJFJH_01005 0.25 -0.3
126,893 - OLJFJH_01005 0.25 -0.4
126,893 - OLJFJH_01005 0.25 +0.1
126,894 + OLJFJH_01005 0.25 -0.7
126,894 + OLJFJH_01005 0.25 -2.6
126,895 - OLJFJH_01005 0.25 +0.1
126,895 - OLJFJH_01005 0.25 -3.5
126,896 + OLJFJH_01005 0.26 -2.3
126,896 + OLJFJH_01005 0.26 -1.1
126,896 + OLJFJH_01005 0.26 +0.5
126,897 - OLJFJH_01005 0.26 -0.4
126,897 - OLJFJH_01005 0.26 +0.0
126,897 - OLJFJH_01005 0.26 +1.6

Or see this region's nucleotide sequence