Strain Fitness in Erwinia amylovora T8 around OLJFJH_00875

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00865 and OLJFJH_00870 overlap by 4 nucleotidesOLJFJH_00870 and OLJFJH_00875 overlap by 4 nucleotides OLJFJH_00865: OLJFJH_00865 - winged helix-turn-helix domain-containing protein, at 93,980 to 94,468 _00865 OLJFJH_00870: OLJFJH_00870 - protein rcaC, at 94,465 to 94,731 _00870 OLJFJH_00875: OLJFJH_00875 - hypothetical protein, at 94,728 to 95,198 _00875 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.223 kb on - strand, within OLJFJH_00865at 94.268 kb on + strand, within OLJFJH_00865at 94.268 kb on + strand, within OLJFJH_00865at 94.271 kb on - strand, within OLJFJH_00865at 94.271 kb on - strand, within OLJFJH_00865at 94.339 kb on - strand, within OLJFJH_00865at 94.353 kb on - strand, within OLJFJH_00865at 94.360 kb on + strand, within OLJFJH_00865at 94.382 kb on - strand, within OLJFJH_00865at 94.581 kb on + strand, within OLJFJH_00870at 94.802 kb on - strand, within OLJFJH_00875at 95.088 kb on - strand, within OLJFJH_00875at 95.125 kb on + strand, within OLJFJH_00875at 95.183 kb on + strandat 95.196 kb on + strandat 95.199 kb on + strandat 95.199 kb on + strandat 95.216 kb on + strandat 95.307 kb on + strandat 95.359 kb on + strandat 95.402 kb on + strandat 95.461 kb on - strandat 95.517 kb on - strandat 95.517 kb on - strandat 95.665 kb on - strandat 95.778 kb on + strandat 95.778 kb on + strandat 95.779 kb on - strandat 95.779 kb on - strandat 95.779 kb on - strandat 95.899 kb on + strandat 95.900 kb on - strandat 95.964 kb on + strandat 95.965 kb on - strandat 95.965 kb on - strandat 96.007 kb on + strandat 96.084 kb on + strandat 96.113 kb on + strandat 96.189 kb on + strandat 96.190 kb on - strandat 96.190 kb on - strandat 96.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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94,223 - OLJFJH_00865 0.50 +0.0
94,268 + OLJFJH_00865 0.59 -0.7
94,268 + OLJFJH_00865 0.59 -2.0
94,271 - OLJFJH_00865 0.60 +1.7
94,271 - OLJFJH_00865 0.60 -3.4
94,339 - OLJFJH_00865 0.73 -1.6
94,353 - OLJFJH_00865 0.76 -0.9
94,360 + OLJFJH_00865 0.78 +2.2
94,382 - OLJFJH_00865 0.82 -1.6
94,581 + OLJFJH_00870 0.43 -1.0
94,802 - OLJFJH_00875 0.16 +0.9
95,088 - OLJFJH_00875 0.76 -3.0
95,125 + OLJFJH_00875 0.84 +1.2
95,183 + -0.9
95,196 + +0.1
95,199 + +0.3
95,199 + -0.7
95,216 + -0.3
95,307 + +0.3
95,359 + -0.3
95,402 + +0.8
95,461 - +0.0
95,517 - +0.3
95,517 - -2.1
95,665 - -0.5
95,778 + -0.2
95,778 + -1.2
95,779 - -0.3
95,779 - -2.2
95,779 - -1.9
95,899 + +2.0
95,900 - +0.7
95,964 + -3.5
95,965 - -2.3
95,965 - +0.1
96,007 + -3.4
96,084 + -0.6
96,113 + +0.1
96,189 + +0.7
96,190 - +0.7
96,190 - +0.9
96,190 - +0.6

Or see this region's nucleotide sequence