Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_00810 and OLJFJH_00815 are separated by 99 nucleotides OLJFJH_00815 and OLJFJH_00820 are separated by 253 nucleotides OLJFJH_00820 and OLJFJH_00825 overlap by 22 nucleotides
OLJFJH_00810: OLJFJH_00810 - carbonate dehydratase, at 80,791 to 81,663
_00810
OLJFJH_00815: OLJFJH_00815 - hypoxanthine phosphoribosyltransferase, at 81,763 to 82,299
_00815
OLJFJH_00820: OLJFJH_00820 - hypothetical protein, at 82,553 to 82,660
_00820
OLJFJH_00825: OLJFJH_00825 - cystathionine gamma-synthase family protein, at 82,639 to 83,832
_00825
Position (kb) 82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.600 kb on - strand at 81.701 kb on + strand at 81.701 kb on + strand at 81.702 kb on - strand at 81.705 kb on - strand at 81.705 kb on - strand at 81.706 kb on + strand at 81.706 kb on + strand at 81.764 kb on + strand at 81.765 kb on - strand at 81.868 kb on + strand, within OLJFJH_00815 at 81.868 kb on + strand, within OLJFJH_00815 at 81.869 kb on - strand, within OLJFJH_00815 at 81.872 kb on + strand, within OLJFJH_00815 at 81.872 kb on + strand, within OLJFJH_00815 at 81.873 kb on - strand, within OLJFJH_00815 at 81.981 kb on + strand, within OLJFJH_00815 at 81.982 kb on - strand, within OLJFJH_00815 at 81.998 kb on - strand, within OLJFJH_00815 at 82.013 kb on - strand, within OLJFJH_00815 at 82.161 kb on + strand, within OLJFJH_00815 at 82.162 kb on - strand, within OLJFJH_00815 at 82.174 kb on + strand, within OLJFJH_00815 at 82.278 kb on + strand at 82.436 kb on + strand at 82.436 kb on + strand at 82.436 kb on + strand at 82.437 kb on - strand at 82.437 kb on - strand at 82.440 kb on + strand at 82.441 kb on - strand at 82.459 kb on - strand at 82.524 kb on + strand at 82.524 kb on + strand at 82.524 kb on + strand at 82.524 kb on + strand at 82.524 kb on + strand at 82.525 kb on - strand at 82.625 kb on + strand, within OLJFJH_00820 at 82.625 kb on + strand, within OLJFJH_00820 at 82.626 kb on - strand, within OLJFJH_00820 at 82.729 kb on + strand at 82.730 kb on - strand at 82.791 kb on + strand, within OLJFJH_00825 at 82.791 kb on + strand, within OLJFJH_00825 at 82.834 kb on + strand, within OLJFJH_00825 at 82.834 kb on + strand, within OLJFJH_00825 at 82.834 kb on + strand, within OLJFJH_00825 at 82.835 kb on - strand, within OLJFJH_00825 at 82.835 kb on - strand, within OLJFJH_00825 at 82.890 kb on + strand, within OLJFJH_00825 at 82.890 kb on + strand, within OLJFJH_00825 at 82.891 kb on - strand, within OLJFJH_00825 at 82.891 kb on - strand, within OLJFJH_00825 at 82.971 kb on + strand, within OLJFJH_00825 at 83.199 kb on + strand, within OLJFJH_00825 at 83.203 kb on - strand, within OLJFJH_00825 at 83.275 kb on + strand, within OLJFJH_00825 at 83.275 kb on + strand, within OLJFJH_00825 at 83.275 kb on + strand, within OLJFJH_00825 at 83.275 kb on + strand, within OLJFJH_00825 at 83.276 kb on - strand, within OLJFJH_00825 at 83.276 kb on - strand, within OLJFJH_00825 at 83.276 kb on - strand, within OLJFJH_00825 at 83.342 kb on + strand, within OLJFJH_00825 at 83.342 kb on + strand, within OLJFJH_00825 at 83.342 kb on + strand, within OLJFJH_00825 at 83.343 kb on - strand, within OLJFJH_00825 at 83.343 kb on - strand, within OLJFJH_00825 at 83.548 kb on + strand, within OLJFJH_00825 at 83.549 kb on - strand, within OLJFJH_00825
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 81,600 - +0.8 81,701 + -1.4 81,701 + -1.4 81,702 - -1.6 81,705 - -0.1 81,705 - -0.1 81,706 + -0.5 81,706 + +1.2 81,764 + -2.2 81,765 - -0.3 81,868 + OLJFJH_00815 0.20 +1.8 81,868 + OLJFJH_00815 0.20 +0.3 81,869 - OLJFJH_00815 0.20 -0.7 81,872 + OLJFJH_00815 0.20 -1.7 81,872 + OLJFJH_00815 0.20 -0.7 81,873 - OLJFJH_00815 0.20 +0.1 81,981 + OLJFJH_00815 0.41 -0.6 81,982 - OLJFJH_00815 0.41 +0.9 81,998 - OLJFJH_00815 0.44 -1.5 82,013 - OLJFJH_00815 0.47 -0.2 82,161 + OLJFJH_00815 0.74 -0.5 82,162 - OLJFJH_00815 0.74 +0.1 82,174 + OLJFJH_00815 0.77 -1.6 82,278 + +0.1 82,436 + -0.8 82,436 + -1.5 82,436 + -1.7 82,437 - -0.7 82,437 - +1.0 82,440 + +0.5 82,441 - +1.7 82,459 - -0.2 82,524 + +1.0 82,524 + +0.4 82,524 + +1.0 82,524 + -0.9 82,524 + -3.4 82,525 - +1.1 82,625 + OLJFJH_00820 0.67 +1.1 82,625 + OLJFJH_00820 0.67 -0.8 82,626 - OLJFJH_00820 0.68 +0.8 82,729 + -0.4 82,730 - -0.2 82,791 + OLJFJH_00825 0.13 +0.8 82,791 + OLJFJH_00825 0.13 +0.3 82,834 + OLJFJH_00825 0.16 -0.2 82,834 + OLJFJH_00825 0.16 -1.2 82,834 + OLJFJH_00825 0.16 +0.7 82,835 - OLJFJH_00825 0.16 -0.0 82,835 - OLJFJH_00825 0.16 +0.8 82,890 + OLJFJH_00825 0.21 +1.2 82,890 + OLJFJH_00825 0.21 -1.9 82,891 - OLJFJH_00825 0.21 +0.3 82,891 - OLJFJH_00825 0.21 -2.1 82,971 + OLJFJH_00825 0.28 -0.4 83,199 + OLJFJH_00825 0.47 +0.5 83,203 - OLJFJH_00825 0.47 -0.5 83,275 + OLJFJH_00825 0.53 -1.5 83,275 + OLJFJH_00825 0.53 -0.5 83,275 + OLJFJH_00825 0.53 +0.5 83,275 + OLJFJH_00825 0.53 +1.8 83,276 - OLJFJH_00825 0.53 -2.0 83,276 - OLJFJH_00825 0.53 -1.3 83,276 - OLJFJH_00825 0.53 -1.9 83,342 + OLJFJH_00825 0.59 -0.1 83,342 + OLJFJH_00825 0.59 +1.2 83,342 + OLJFJH_00825 0.59 +0.8 83,343 - OLJFJH_00825 0.59 +0.8 83,343 - OLJFJH_00825 0.59 +0.4 83,548 + OLJFJH_00825 0.76 +1.1 83,549 - OLJFJH_00825 0.76 +1.4
Or see this region's nucleotide sequence