Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS06010

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS06005 and HMPREF1181_RS06010 are separated by 141 nucleotidesHMPREF1181_RS06010 and HMPREF1181_RS06015 are separated by 26 nucleotides HMPREF1181_RS06005: HMPREF1181_RS06005 - glycoside hydrolase family 130 protein, at 536,114 to 537,097 _RS06005 HMPREF1181_RS06010: HMPREF1181_RS06010 - MFS transporter, at 537,239 to 538,558 _RS06010 HMPREF1181_RS06015: HMPREF1181_RS06015 - GH92 family glycosyl hydrolase, at 538,585 to 540,876 _RS06015 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2at 536.255 kb on + strand, within HMPREF1181_RS06005at 536.255 kb on + strand, within HMPREF1181_RS06005at 536.260 kb on + strand, within HMPREF1181_RS06005at 536.380 kb on - strand, within HMPREF1181_RS06005at 536.484 kb on - strand, within HMPREF1181_RS06005at 536.576 kb on - strand, within HMPREF1181_RS06005at 536.576 kb on - strand, within HMPREF1181_RS06005at 536.662 kb on + strand, within HMPREF1181_RS06005at 536.704 kb on + strand, within HMPREF1181_RS06005at 536.754 kb on + strand, within HMPREF1181_RS06005at 536.797 kb on - strand, within HMPREF1181_RS06005at 536.908 kb on + strand, within HMPREF1181_RS06005at 537.036 kb on - strandat 537.085 kb on + strandat 537.092 kb on - strandat 537.112 kb on - strandat 537.141 kb on + strandat 537.142 kb on - strandat 537.145 kb on + strandat 537.148 kb on - strandat 537.150 kb on - strandat 537.240 kb on + strandat 537.260 kb on + strandat 537.274 kb on - strandat 537.278 kb on - strandat 537.295 kb on + strandat 537.458 kb on + strand, within HMPREF1181_RS06010at 537.561 kb on + strand, within HMPREF1181_RS06010at 537.562 kb on - strand, within HMPREF1181_RS06010at 537.564 kb on - strand, within HMPREF1181_RS06010at 537.564 kb on - strand, within HMPREF1181_RS06010at 537.578 kb on - strand, within HMPREF1181_RS06010at 537.578 kb on - strand, within HMPREF1181_RS06010at 537.580 kb on - strand, within HMPREF1181_RS06010at 537.651 kb on + strand, within HMPREF1181_RS06010at 537.651 kb on + strand, within HMPREF1181_RS06010at 537.706 kb on - strand, within HMPREF1181_RS06010at 537.709 kb on - strand, within HMPREF1181_RS06010at 537.716 kb on + strand, within HMPREF1181_RS06010at 537.716 kb on + strand, within HMPREF1181_RS06010at 537.830 kb on - strand, within HMPREF1181_RS06010at 537.831 kb on + strand, within HMPREF1181_RS06010at 537.831 kb on + strand, within HMPREF1181_RS06010at 537.831 kb on + strand, within HMPREF1181_RS06010at 537.832 kb on - strand, within HMPREF1181_RS06010at 537.834 kb on + strand, within HMPREF1181_RS06010at 537.835 kb on - strand, within HMPREF1181_RS06010at 537.840 kb on - strand, within HMPREF1181_RS06010at 537.840 kb on - strand, within HMPREF1181_RS06010at 537.842 kb on - strand, within HMPREF1181_RS06010at 537.969 kb on - strand, within HMPREF1181_RS06010at 537.969 kb on - strand, within HMPREF1181_RS06010at 537.995 kb on + strand, within HMPREF1181_RS06010at 537.995 kb on + strand, within HMPREF1181_RS06010at 537.996 kb on - strand, within HMPREF1181_RS06010at 538.065 kb on + strand, within HMPREF1181_RS06010at 538.127 kb on - strand, within HMPREF1181_RS06010at 538.152 kb on + strand, within HMPREF1181_RS06010at 538.171 kb on + strand, within HMPREF1181_RS06010at 538.188 kb on + strand, within HMPREF1181_RS06010at 538.467 kb on - strandat 538.532 kb on + strandat 538.545 kb on + strandat 538.558 kb on + strandat 538.558 kb on + strandat 538.559 kb on - strandat 538.559 kb on - strandat 538.561 kb on - strandat 538.721 kb on + strandat 538.722 kb on - strandat 538.750 kb on + strandat 538.863 kb on + strand, within HMPREF1181_RS06015at 538.932 kb on - strand, within HMPREF1181_RS06015at 538.994 kb on + strand, within HMPREF1181_RS06015at 539.007 kb on + strand, within HMPREF1181_RS06015at 539.037 kb on - strand, within HMPREF1181_RS06015at 539.213 kb on + strand, within HMPREF1181_RS06015at 539.214 kb on - strand, within HMPREF1181_RS06015at 539.312 kb on + strand, within HMPREF1181_RS06015at 539.313 kb on - strand, within HMPREF1181_RS06015at 539.319 kb on + strand, within HMPREF1181_RS06015at 539.320 kb on - strand, within HMPREF1181_RS06015at 539.321 kb on + strand, within HMPREF1181_RS06015at 539.343 kb on - strand, within HMPREF1181_RS06015at 539.406 kb on - strand, within HMPREF1181_RS06015at 539.406 kb on - strand, within HMPREF1181_RS06015at 539.411 kb on + strand, within HMPREF1181_RS06015at 539.412 kb on - strand, within HMPREF1181_RS06015at 539.459 kb on + strand, within HMPREF1181_RS06015at 539.459 kb on + strand, within HMPREF1181_RS06015at 539.460 kb on - strand, within HMPREF1181_RS06015at 539.460 kb on - strand, within HMPREF1181_RS06015at 539.509 kb on + strand, within HMPREF1181_RS06015at 539.544 kb on - strand, within HMPREF1181_RS06015

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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536,255 + HMPREF1181_RS06005 0.14 -0.7
536,255 + HMPREF1181_RS06005 0.14 +0.5
536,260 + HMPREF1181_RS06005 0.15 -0.4
536,380 - HMPREF1181_RS06005 0.27 -0.0
536,484 - HMPREF1181_RS06005 0.38 +0.2
536,576 - HMPREF1181_RS06005 0.47 -0.4
536,576 - HMPREF1181_RS06005 0.47 -0.8
536,662 + HMPREF1181_RS06005 0.56 -0.0
536,704 + HMPREF1181_RS06005 0.60 -0.3
536,754 + HMPREF1181_RS06005 0.65 -0.3
536,797 - HMPREF1181_RS06005 0.69 -1.3
536,908 + HMPREF1181_RS06005 0.81 +0.1
537,036 - -1.5
537,085 + -0.9
537,092 - -0.3
537,112 - +0.0
537,141 + -0.3
537,142 - -1.6
537,145 + -0.1
537,148 - -0.3
537,150 - -0.4
537,240 + -0.5
537,260 + +0.5
537,274 - -1.7
537,278 - +0.2
537,295 + +1.1
537,458 + HMPREF1181_RS06010 0.17 -2.5
537,561 + HMPREF1181_RS06010 0.24 +1.3
537,562 - HMPREF1181_RS06010 0.24 -1.1
537,564 - HMPREF1181_RS06010 0.25 -1.3
537,564 - HMPREF1181_RS06010 0.25 +0.9
537,578 - HMPREF1181_RS06010 0.26 -1.0
537,578 - HMPREF1181_RS06010 0.26 -0.8
537,580 - HMPREF1181_RS06010 0.26 -1.3
537,651 + HMPREF1181_RS06010 0.31 -0.1
537,651 + HMPREF1181_RS06010 0.31 -0.2
537,706 - HMPREF1181_RS06010 0.35 -0.5
537,709 - HMPREF1181_RS06010 0.36 -0.8
537,716 + HMPREF1181_RS06010 0.36 -1.0
537,716 + HMPREF1181_RS06010 0.36 -1.7
537,830 - HMPREF1181_RS06010 0.45 -0.1
537,831 + HMPREF1181_RS06010 0.45 -0.4
537,831 + HMPREF1181_RS06010 0.45 -1.1
537,831 + HMPREF1181_RS06010 0.45 -1.7
537,832 - HMPREF1181_RS06010 0.45 +2.0
537,834 + HMPREF1181_RS06010 0.45 -1.1
537,835 - HMPREF1181_RS06010 0.45 -1.3
537,840 - HMPREF1181_RS06010 0.46 +0.7
537,840 - HMPREF1181_RS06010 0.46 +0.1
537,842 - HMPREF1181_RS06010 0.46 -1.1
537,969 - HMPREF1181_RS06010 0.55 +0.8
537,969 - HMPREF1181_RS06010 0.55 -0.1
537,995 + HMPREF1181_RS06010 0.57 +0.1
537,995 + HMPREF1181_RS06010 0.57 -0.2
537,996 - HMPREF1181_RS06010 0.57 -1.0
538,065 + HMPREF1181_RS06010 0.63 +0.8
538,127 - HMPREF1181_RS06010 0.67 +0.5
538,152 + HMPREF1181_RS06010 0.69 +0.5
538,171 + HMPREF1181_RS06010 0.71 +0.5
538,188 + HMPREF1181_RS06010 0.72 -1.7
538,467 - +0.1
538,532 + +0.2
538,545 + -0.7
538,558 + +2.2
538,558 + -0.3
538,559 - -0.5
538,559 - -0.2
538,561 - -1.0
538,721 + -0.9
538,722 - -1.0
538,750 + -0.9
538,863 + HMPREF1181_RS06015 0.12 -0.8
538,932 - HMPREF1181_RS06015 0.15 -1.3
538,994 + HMPREF1181_RS06015 0.18 +0.5
539,007 + HMPREF1181_RS06015 0.18 -1.3
539,037 - HMPREF1181_RS06015 0.20 +0.2
539,213 + HMPREF1181_RS06015 0.27 +0.3
539,214 - HMPREF1181_RS06015 0.27 -0.6
539,312 + HMPREF1181_RS06015 0.32 -1.8
539,313 - HMPREF1181_RS06015 0.32 -0.6
539,319 + HMPREF1181_RS06015 0.32 -0.2
539,320 - HMPREF1181_RS06015 0.32 -0.6
539,321 + HMPREF1181_RS06015 0.32 -1.3
539,343 - HMPREF1181_RS06015 0.33 -0.1
539,406 - HMPREF1181_RS06015 0.36 -2.4
539,406 - HMPREF1181_RS06015 0.36 -1.2
539,411 + HMPREF1181_RS06015 0.36 +0.8
539,412 - HMPREF1181_RS06015 0.36 -1.2
539,459 + HMPREF1181_RS06015 0.38 -1.0
539,459 + HMPREF1181_RS06015 0.38 -0.6
539,460 - HMPREF1181_RS06015 0.38 -0.2
539,460 - HMPREF1181_RS06015 0.38 -2.1
539,509 + HMPREF1181_RS06015 0.40 +0.2
539,544 - HMPREF1181_RS06015 0.42 -1.5

Or see this region's nucleotide sequence