Experiment: Columbia 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09045 and HMPREF1181_RS09050 are separated by 92 nucleotides HMPREF1181_RS09050 and HMPREF1181_RS18090 are separated by 183 nucleotides HMPREF1181_RS18090 and HMPREF1181_RS09055 are separated by 139 nucleotides
HMPREF1181_RS09045: HMPREF1181_RS09045 - NADH-quinone oxidoreductase subunit N, at 410,785 to 412,224
_RS09045
HMPREF1181_RS09050: HMPREF1181_RS09050 - helix-turn-helix domain-containing protein, at 412,317 to 413,186
_RS09050
HMPREF1181_RS18090: HMPREF1181_RS18090 - hypothetical protein, at 413,370 to 413,528
_RS18090
HMPREF1181_RS09055: HMPREF1181_RS09055 - mannonate dehydratase, at 413,668 to 414,855
_RS09055
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.337 kb on + strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.405 kb on + strand, within HMPREF1181_RS09045 at 411.483 kb on - strand, within HMPREF1181_RS09045 at 411.754 kb on - strand, within HMPREF1181_RS09045 at 411.770 kb on - strand, within HMPREF1181_RS09045 at 411.850 kb on - strand, within HMPREF1181_RS09045 at 411.875 kb on - strand, within HMPREF1181_RS09045 at 411.889 kb on - strand, within HMPREF1181_RS09045 at 411.889 kb on - strand, within HMPREF1181_RS09045 at 411.934 kb on - strand, within HMPREF1181_RS09045 at 412.075 kb on + strand, within HMPREF1181_RS09045 at 412.076 kb on - strand, within HMPREF1181_RS09045 at 412.120 kb on - strand at 412.123 kb on + strand at 412.174 kb on - strand at 412.219 kb on - strand at 412.240 kb on - strand at 412.318 kb on + strand at 412.326 kb on + strand at 412.470 kb on + strand, within HMPREF1181_RS09050 at 412.470 kb on + strand, within HMPREF1181_RS09050 at 412.595 kb on - strand, within HMPREF1181_RS09050 at 412.629 kb on - strand, within HMPREF1181_RS09050 at 412.660 kb on + strand, within HMPREF1181_RS09050 at 412.735 kb on - strand, within HMPREF1181_RS09050 at 412.948 kb on + strand, within HMPREF1181_RS09050 at 412.995 kb on + strand, within HMPREF1181_RS09050 at 413.022 kb on + strand, within HMPREF1181_RS09050 at 413.023 kb on - strand, within HMPREF1181_RS09050 at 413.023 kb on - strand, within HMPREF1181_RS09050 at 413.122 kb on + strand at 413.125 kb on + strand at 413.125 kb on + strand at 413.175 kb on + strand at 413.260 kb on + strand at 413.263 kb on + strand at 413.269 kb on + strand at 413.269 kb on + strand at 413.270 kb on - strand at 413.379 kb on - strand at 413.401 kb on - strand, within HMPREF1181_RS18090 at 413.401 kb on - strand, within HMPREF1181_RS18090 at 413.436 kb on - strand, within HMPREF1181_RS18090 at 413.457 kb on + strand, within HMPREF1181_RS18090 at 413.485 kb on - strand, within HMPREF1181_RS18090 at 413.494 kb on + strand, within HMPREF1181_RS18090 at 413.495 kb on - strand, within HMPREF1181_RS18090 at 413.496 kb on + strand, within HMPREF1181_RS18090 at 413.496 kb on + strand, within HMPREF1181_RS18090 at 413.502 kb on - strand, within HMPREF1181_RS18090 at 413.548 kb on - strand at 413.613 kb on + strand at 413.718 kb on + strand at 413.748 kb on - strand at 413.818 kb on + strand, within HMPREF1181_RS09055 at 413.818 kb on + strand, within HMPREF1181_RS09055 at 413.819 kb on - strand, within HMPREF1181_RS09055 at 413.819 kb on - strand, within HMPREF1181_RS09055 at 413.958 kb on - strand, within HMPREF1181_RS09055 at 413.966 kb on + strand, within HMPREF1181_RS09055 at 413.966 kb on + strand, within HMPREF1181_RS09055 at 413.971 kb on + strand, within HMPREF1181_RS09055 at 413.971 kb on + strand, within HMPREF1181_RS09055 at 413.999 kb on + strand, within HMPREF1181_RS09055 at 414.116 kb on - strand, within HMPREF1181_RS09055
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media remove 411,337 + HMPREF1181_RS09045 0.38 +0.3 411,338 - HMPREF1181_RS09045 0.38 +0.1 411,338 - HMPREF1181_RS09045 0.38 -0.1 411,405 + HMPREF1181_RS09045 0.43 -0.5 411,483 - HMPREF1181_RS09045 0.48 +0.5 411,754 - HMPREF1181_RS09045 0.67 +0.4 411,770 - HMPREF1181_RS09045 0.68 -0.7 411,850 - HMPREF1181_RS09045 0.74 -0.4 411,875 - HMPREF1181_RS09045 0.76 +0.9 411,889 - HMPREF1181_RS09045 0.77 -0.7 411,889 - HMPREF1181_RS09045 0.77 -0.2 411,934 - HMPREF1181_RS09045 0.80 -0.1 412,075 + HMPREF1181_RS09045 0.90 -1.0 412,076 - HMPREF1181_RS09045 0.90 -0.6 412,120 - -0.3 412,123 + -0.9 412,174 - +0.1 412,219 - -0.5 412,240 - +0.1 412,318 + +0.2 412,326 + -0.2 412,470 + HMPREF1181_RS09050 0.18 -0.5 412,470 + HMPREF1181_RS09050 0.18 -0.0 412,595 - HMPREF1181_RS09050 0.32 -0.2 412,629 - HMPREF1181_RS09050 0.36 -0.2 412,660 + HMPREF1181_RS09050 0.39 +0.3 412,735 - HMPREF1181_RS09050 0.48 -2.0 412,948 + HMPREF1181_RS09050 0.73 -0.2 412,995 + HMPREF1181_RS09050 0.78 -0.8 413,022 + HMPREF1181_RS09050 0.81 -0.7 413,023 - HMPREF1181_RS09050 0.81 +0.7 413,023 - HMPREF1181_RS09050 0.81 -0.8 413,122 + +0.3 413,125 + -0.1 413,125 + +0.2 413,175 + +0.3 413,260 + -0.9 413,263 + +0.1 413,269 + -0.5 413,269 + -0.6 413,270 - +0.1 413,379 - +0.1 413,401 - HMPREF1181_RS18090 0.19 +0.2 413,401 - HMPREF1181_RS18090 0.19 -0.4 413,436 - HMPREF1181_RS18090 0.42 -1.3 413,457 + HMPREF1181_RS18090 0.55 +0.5 413,485 - HMPREF1181_RS18090 0.72 +0.3 413,494 + HMPREF1181_RS18090 0.78 +0.1 413,495 - HMPREF1181_RS18090 0.79 +0.3 413,496 + HMPREF1181_RS18090 0.79 -0.3 413,496 + HMPREF1181_RS18090 0.79 +1.2 413,502 - HMPREF1181_RS18090 0.83 -0.3 413,548 - -1.3 413,613 + +0.1 413,718 + +0.4 413,748 - -0.9 413,818 + HMPREF1181_RS09055 0.13 -0.4 413,818 + HMPREF1181_RS09055 0.13 +1.1 413,819 - HMPREF1181_RS09055 0.13 +0.6 413,819 - HMPREF1181_RS09055 0.13 -0.2 413,958 - HMPREF1181_RS09055 0.24 -0.6 413,966 + HMPREF1181_RS09055 0.25 +0.5 413,966 + HMPREF1181_RS09055 0.25 -1.1 413,971 + HMPREF1181_RS09055 0.26 +2.3 413,971 + HMPREF1181_RS09055 0.26 +0.1 413,999 + HMPREF1181_RS09055 0.28 -0.0 414,116 - HMPREF1181_RS09055 0.38 +0.4
Or see this region's nucleotide sequence