Experiment: Columbia 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04590 and HMPREF1181_RS04595 are separated by 29 nucleotides HMPREF1181_RS04595 and HMPREF1181_RS04600 overlap by 29 nucleotides HMPREF1181_RS04600 and HMPREF1181_RS04605 are separated by 251 nucleotides
HMPREF1181_RS04590: HMPREF1181_RS04590 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 162,578 to 163,132
_RS04590
HMPREF1181_RS04595: HMPREF1181_RS04595 - amidohydrolase, at 163,162 to 164,001
_RS04595
HMPREF1181_RS04600: HMPREF1181_RS04600 - SIMPL domain-containing protein, at 163,973 to 164,674
_RS04600
HMPREF1181_RS04605: HMPREF1181_RS04605 - N-acetylglucosamine-6-phosphate deacetylase, at 164,926 to 166,092
_RS04605
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.137 kb on + strand at 163.213 kb on - strand at 163.350 kb on + strand, within HMPREF1181_RS04595 at 163.351 kb on - strand, within HMPREF1181_RS04595 at 163.356 kb on + strand, within HMPREF1181_RS04595 at 163.356 kb on + strand, within HMPREF1181_RS04595 at 163.356 kb on - strand, within HMPREF1181_RS04595 at 163.365 kb on - strand, within HMPREF1181_RS04595 at 163.391 kb on + strand, within HMPREF1181_RS04595 at 163.408 kb on + strand, within HMPREF1181_RS04595 at 163.409 kb on - strand, within HMPREF1181_RS04595 at 163.409 kb on - strand, within HMPREF1181_RS04595 at 163.412 kb on + strand, within HMPREF1181_RS04595 at 163.471 kb on - strand, within HMPREF1181_RS04595 at 163.587 kb on + strand, within HMPREF1181_RS04595 at 163.587 kb on + strand, within HMPREF1181_RS04595 at 163.603 kb on - strand, within HMPREF1181_RS04595 at 163.666 kb on - strand, within HMPREF1181_RS04595 at 163.694 kb on - strand, within HMPREF1181_RS04595 at 163.713 kb on - strand, within HMPREF1181_RS04595 at 163.736 kb on + strand, within HMPREF1181_RS04595 at 163.765 kb on - strand, within HMPREF1181_RS04595 at 163.819 kb on + strand, within HMPREF1181_RS04595 at 163.820 kb on - strand, within HMPREF1181_RS04595 at 163.846 kb on + strand, within HMPREF1181_RS04595 at 163.847 kb on - strand, within HMPREF1181_RS04595 at 163.974 kb on + strand at 164.015 kb on - strand at 164.021 kb on - strand at 164.023 kb on + strand at 164.025 kb on + strand at 164.096 kb on - strand, within HMPREF1181_RS04600 at 164.147 kb on - strand, within HMPREF1181_RS04600 at 164.196 kb on + strand, within HMPREF1181_RS04600 at 164.197 kb on - strand, within HMPREF1181_RS04600 at 164.206 kb on + strand, within HMPREF1181_RS04600 at 164.206 kb on + strand, within HMPREF1181_RS04600 at 164.207 kb on - strand, within HMPREF1181_RS04600 at 164.284 kb on + strand, within HMPREF1181_RS04600 at 164.284 kb on + strand, within HMPREF1181_RS04600 at 164.285 kb on - strand, within HMPREF1181_RS04600 at 164.326 kb on + strand, within HMPREF1181_RS04600 at 164.327 kb on - strand, within HMPREF1181_RS04600 at 164.341 kb on + strand, within HMPREF1181_RS04600 at 164.376 kb on - strand, within HMPREF1181_RS04600 at 164.464 kb on + strand, within HMPREF1181_RS04600 at 164.561 kb on + strand, within HMPREF1181_RS04600 at 164.573 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.608 kb on + strand at 164.608 kb on + strand at 164.608 kb on + strand at 164.609 kb on - strand at 164.612 kb on + strand at 164.627 kb on + strand at 164.628 kb on - strand at 164.645 kb on - strand at 164.691 kb on - strand at 164.701 kb on + strand at 164.725 kb on - strand at 164.785 kb on + strand at 164.805 kb on - strand at 164.818 kb on - strand at 164.874 kb on + strand at 164.897 kb on + strand at 164.911 kb on + strand at 164.926 kb on - strand at 164.940 kb on + strand at 164.952 kb on + strand at 165.066 kb on - strand, within HMPREF1181_RS04605 at 165.066 kb on - strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.077 kb on - strand, within HMPREF1181_RS04605 at 165.193 kb on - strand, within HMPREF1181_RS04605 at 165.222 kb on + strand, within HMPREF1181_RS04605 at 165.222 kb on + strand, within HMPREF1181_RS04605 at 165.288 kb on + strand, within HMPREF1181_RS04605 at 165.288 kb on + strand, within HMPREF1181_RS04605 at 165.289 kb on - strand, within HMPREF1181_RS04605 at 165.316 kb on + strand, within HMPREF1181_RS04605 at 165.391 kb on - strand, within HMPREF1181_RS04605 at 165.466 kb on + strand, within HMPREF1181_RS04605 at 165.466 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.532 kb on - strand, within HMPREF1181_RS04605 at 165.532 kb on - strand, within HMPREF1181_RS04605 at 165.539 kb on - strand, within HMPREF1181_RS04605 at 165.571 kb on + strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.637 kb on + strand, within HMPREF1181_RS04605 at 165.637 kb on + strand, within HMPREF1181_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media remove 162,991 - HMPREF1181_RS04590 0.74 -2.1 162,991 - HMPREF1181_RS04590 0.74 -1.0 162,991 - HMPREF1181_RS04590 0.74 -0.8 163,069 - HMPREF1181_RS04590 0.88 -3.3 163,069 - HMPREF1181_RS04590 0.88 -3.4 163,069 - HMPREF1181_RS04590 0.88 -3.6 163,069 - HMPREF1181_RS04590 0.88 -3.3 163,137 + +0.1 163,213 - -0.9 163,350 + HMPREF1181_RS04595 0.22 -0.9 163,351 - HMPREF1181_RS04595 0.23 -0.2 163,356 + HMPREF1181_RS04595 0.23 -0.6 163,356 + HMPREF1181_RS04595 0.23 -0.3 163,356 - HMPREF1181_RS04595 0.23 +0.1 163,365 - HMPREF1181_RS04595 0.24 -0.7 163,391 + HMPREF1181_RS04595 0.27 -0.8 163,408 + HMPREF1181_RS04595 0.29 -0.5 163,409 - HMPREF1181_RS04595 0.29 -0.7 163,409 - HMPREF1181_RS04595 0.29 +0.5 163,412 + HMPREF1181_RS04595 0.30 +1.3 163,471 - HMPREF1181_RS04595 0.37 -0.3 163,587 + HMPREF1181_RS04595 0.51 -0.3 163,587 + HMPREF1181_RS04595 0.51 -0.9 163,603 - HMPREF1181_RS04595 0.53 +0.0 163,666 - HMPREF1181_RS04595 0.60 +0.3 163,694 - HMPREF1181_RS04595 0.63 -0.3 163,713 - HMPREF1181_RS04595 0.66 -0.1 163,736 + HMPREF1181_RS04595 0.68 +0.2 163,765 - HMPREF1181_RS04595 0.72 -2.0 163,819 + HMPREF1181_RS04595 0.78 -0.1 163,820 - HMPREF1181_RS04595 0.78 +0.8 163,846 + HMPREF1181_RS04595 0.81 +0.0 163,847 - HMPREF1181_RS04595 0.82 -1.5 163,974 + -0.3 164,015 - +0.3 164,021 - +0.0 164,023 + +1.5 164,025 + -0.2 164,096 - HMPREF1181_RS04600 0.18 -1.2 164,147 - HMPREF1181_RS04600 0.25 -0.3 164,196 + HMPREF1181_RS04600 0.32 -0.3 164,197 - HMPREF1181_RS04600 0.32 -0.0 164,206 + HMPREF1181_RS04600 0.33 +0.2 164,206 + HMPREF1181_RS04600 0.33 +1.2 164,207 - HMPREF1181_RS04600 0.33 -0.0 164,284 + HMPREF1181_RS04600 0.44 -0.6 164,284 + HMPREF1181_RS04600 0.44 +0.2 164,285 - HMPREF1181_RS04600 0.44 -0.2 164,326 + HMPREF1181_RS04600 0.50 +0.6 164,327 - HMPREF1181_RS04600 0.50 +0.1 164,341 + HMPREF1181_RS04600 0.52 +0.3 164,376 - HMPREF1181_RS04600 0.57 +0.6 164,464 + HMPREF1181_RS04600 0.70 +0.3 164,561 + HMPREF1181_RS04600 0.84 -0.1 164,573 - HMPREF1181_RS04600 0.85 +0.5 164,598 - HMPREF1181_RS04600 0.89 +0.2 164,598 - HMPREF1181_RS04600 0.89 +0.0 164,598 - HMPREF1181_RS04600 0.89 +0.5 164,608 + +0.7 164,608 + -0.2 164,608 + -0.9 164,609 - +0.0 164,612 + +0.2 164,627 + -1.0 164,628 - -0.1 164,645 - +0.1 164,691 - +0.6 164,701 + -0.5 164,725 - -0.3 164,785 + -2.5 164,805 - +0.3 164,818 - -0.0 164,874 + +0.2 164,897 + +0.4 164,911 + +0.5 164,926 - -0.1 164,940 + -0.0 164,952 + -0.6 165,066 - HMPREF1181_RS04605 0.12 -0.9 165,066 - HMPREF1181_RS04605 0.12 -0.3 165,076 + HMPREF1181_RS04605 0.13 +0.3 165,076 + HMPREF1181_RS04605 0.13 +0.2 165,076 + HMPREF1181_RS04605 0.13 +0.1 165,077 - HMPREF1181_RS04605 0.13 -1.5 165,193 - HMPREF1181_RS04605 0.23 +0.3 165,222 + HMPREF1181_RS04605 0.25 -1.0 165,222 + HMPREF1181_RS04605 0.25 +0.5 165,288 + HMPREF1181_RS04605 0.31 -0.1 165,288 + HMPREF1181_RS04605 0.31 +0.5 165,289 - HMPREF1181_RS04605 0.31 +0.2 165,316 + HMPREF1181_RS04605 0.33 -0.5 165,391 - HMPREF1181_RS04605 0.40 -0.4 165,466 + HMPREF1181_RS04605 0.46 +0.2 165,466 + HMPREF1181_RS04605 0.46 -1.4 165,527 + HMPREF1181_RS04605 0.51 -0.5 165,527 + HMPREF1181_RS04605 0.51 +0.1 165,527 + HMPREF1181_RS04605 0.51 -0.8 165,527 + HMPREF1181_RS04605 0.51 +0.0 165,532 - HMPREF1181_RS04605 0.52 -0.1 165,532 - HMPREF1181_RS04605 0.52 +0.4 165,539 - HMPREF1181_RS04605 0.53 -1.0 165,571 + HMPREF1181_RS04605 0.55 -0.1 165,572 - HMPREF1181_RS04605 0.55 +0.2 165,572 - HMPREF1181_RS04605 0.55 -0.1 165,572 - HMPREF1181_RS04605 0.55 +0.4 165,637 + HMPREF1181_RS04605 0.61 +0.3 165,637 + HMPREF1181_RS04605 0.61 -0.2
Or see this region's nucleotide sequence