Experiment: BHI 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03035 and HMPREF1181_RS03040 are separated by 33 nucleotides HMPREF1181_RS03040 and HMPREF1181_RS03045 are separated by 27 nucleotides
HMPREF1181_RS03035: HMPREF1181_RS03035 - DUF1343 domain-containing protein, at 771,772 to 773,010
_RS03035
HMPREF1181_RS03040: HMPREF1181_RS03040 - MFS transporter, at 773,044 to 774,366
_RS03040
HMPREF1181_RS03045: HMPREF1181_RS03045 - SpoIID/LytB domain-containing protein, at 774,394 to 775,773
_RS03045
Position (kb) 773
774
775 Strain fitness (log2 ratio) -2
-1
0
1 at 772.062 kb on + strand, within HMPREF1181_RS03035 at 772.063 kb on - strand, within HMPREF1181_RS03035 at 772.194 kb on - strand, within HMPREF1181_RS03035 at 772.198 kb on + strand, within HMPREF1181_RS03035 at 772.314 kb on + strand, within HMPREF1181_RS03035 at 772.315 kb on - strand, within HMPREF1181_RS03035 at 772.348 kb on + strand, within HMPREF1181_RS03035 at 772.349 kb on - strand, within HMPREF1181_RS03035 at 772.492 kb on - strand, within HMPREF1181_RS03035 at 772.499 kb on - strand, within HMPREF1181_RS03035 at 772.540 kb on - strand, within HMPREF1181_RS03035 at 772.587 kb on + strand, within HMPREF1181_RS03035 at 772.595 kb on + strand, within HMPREF1181_RS03035 at 772.632 kb on - strand, within HMPREF1181_RS03035 at 772.634 kb on - strand, within HMPREF1181_RS03035 at 772.697 kb on + strand, within HMPREF1181_RS03035 at 772.753 kb on + strand, within HMPREF1181_RS03035 at 772.754 kb on - strand, within HMPREF1181_RS03035 at 772.754 kb on - strand, within HMPREF1181_RS03035 at 772.766 kb on - strand, within HMPREF1181_RS03035 at 772.824 kb on + strand, within HMPREF1181_RS03035 at 772.959 kb on - strand at 773.024 kb on - strand at 773.096 kb on - strand at 773.123 kb on - strand at 773.143 kb on - strand at 773.225 kb on + strand, within HMPREF1181_RS03040 at 773.225 kb on + strand, within HMPREF1181_RS03040 at 773.265 kb on + strand, within HMPREF1181_RS03040 at 773.265 kb on + strand, within HMPREF1181_RS03040 at 773.265 kb on + strand, within HMPREF1181_RS03040 at 773.275 kb on - strand, within HMPREF1181_RS03040 at 773.276 kb on + strand, within HMPREF1181_RS03040 at 773.276 kb on + strand, within HMPREF1181_RS03040 at 773.277 kb on - strand, within HMPREF1181_RS03040 at 773.367 kb on - strand, within HMPREF1181_RS03040 at 773.394 kb on + strand, within HMPREF1181_RS03040 at 773.500 kb on + strand, within HMPREF1181_RS03040 at 773.531 kb on - strand, within HMPREF1181_RS03040 at 773.633 kb on - strand, within HMPREF1181_RS03040 at 773.768 kb on - strand, within HMPREF1181_RS03040 at 773.823 kb on + strand, within HMPREF1181_RS03040 at 773.884 kb on - strand, within HMPREF1181_RS03040 at 774.016 kb on + strand, within HMPREF1181_RS03040 at 774.042 kb on + strand, within HMPREF1181_RS03040 at 774.196 kb on - strand, within HMPREF1181_RS03040 at 774.297 kb on - strand at 774.318 kb on - strand at 774.319 kb on + strand at 774.396 kb on - strand at 774.403 kb on + strand at 774.403 kb on + strand at 774.404 kb on - strand at 774.404 kb on - strand at 774.443 kb on - strand at 774.663 kb on + strand, within HMPREF1181_RS03045 at 774.787 kb on - strand, within HMPREF1181_RS03045 at 774.806 kb on + strand, within HMPREF1181_RS03045 at 774.899 kb on - strand, within HMPREF1181_RS03045 at 774.999 kb on - strand, within HMPREF1181_RS03045 at 775.093 kb on + strand, within HMPREF1181_RS03045 at 775.094 kb on - strand, within HMPREF1181_RS03045 at 775.186 kb on + strand, within HMPREF1181_RS03045 at 775.296 kb on + strand, within HMPREF1181_RS03045 at 775.318 kb on + strand, within HMPREF1181_RS03045 at 775.319 kb on - strand, within HMPREF1181_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media remove 772,062 + HMPREF1181_RS03035 0.23 +0.2 772,063 - HMPREF1181_RS03035 0.23 -0.6 772,194 - HMPREF1181_RS03035 0.34 -2.3 772,198 + HMPREF1181_RS03035 0.34 +0.2 772,314 + HMPREF1181_RS03035 0.44 -0.0 772,315 - HMPREF1181_RS03035 0.44 -2.0 772,348 + HMPREF1181_RS03035 0.46 -0.9 772,349 - HMPREF1181_RS03035 0.47 -2.7 772,492 - HMPREF1181_RS03035 0.58 -1.3 772,499 - HMPREF1181_RS03035 0.59 -1.4 772,540 - HMPREF1181_RS03035 0.62 -0.2 772,587 + HMPREF1181_RS03035 0.66 -0.2 772,595 + HMPREF1181_RS03035 0.66 -0.6 772,632 - HMPREF1181_RS03035 0.69 -1.1 772,634 - HMPREF1181_RS03035 0.70 -0.6 772,697 + HMPREF1181_RS03035 0.75 -0.1 772,753 + HMPREF1181_RS03035 0.79 +0.1 772,754 - HMPREF1181_RS03035 0.79 -0.0 772,754 - HMPREF1181_RS03035 0.79 -1.1 772,766 - HMPREF1181_RS03035 0.80 -0.6 772,824 + HMPREF1181_RS03035 0.85 -0.3 772,959 - -1.2 773,024 - +0.1 773,096 - -1.1 773,123 - -1.4 773,143 - -1.2 773,225 + HMPREF1181_RS03040 0.14 -0.4 773,225 + HMPREF1181_RS03040 0.14 -0.7 773,265 + HMPREF1181_RS03040 0.17 -1.1 773,265 + HMPREF1181_RS03040 0.17 -0.7 773,265 + HMPREF1181_RS03040 0.17 +0.6 773,275 - HMPREF1181_RS03040 0.17 -0.4 773,276 + HMPREF1181_RS03040 0.18 -1.0 773,276 + HMPREF1181_RS03040 0.18 -0.1 773,277 - HMPREF1181_RS03040 0.18 -0.9 773,367 - HMPREF1181_RS03040 0.24 -2.2 773,394 + HMPREF1181_RS03040 0.26 -0.0 773,500 + HMPREF1181_RS03040 0.34 -0.2 773,531 - HMPREF1181_RS03040 0.37 -1.2 773,633 - HMPREF1181_RS03040 0.45 -0.9 773,768 - HMPREF1181_RS03040 0.55 -0.6 773,823 + HMPREF1181_RS03040 0.59 -0.3 773,884 - HMPREF1181_RS03040 0.63 -0.1 774,016 + HMPREF1181_RS03040 0.73 -0.6 774,042 + HMPREF1181_RS03040 0.75 -0.3 774,196 - HMPREF1181_RS03040 0.87 -0.9 774,297 - +0.5 774,318 - -1.0 774,319 + -1.6 774,396 - -0.3 774,403 + -0.1 774,403 + -0.5 774,404 - -1.1 774,404 - -0.2 774,443 - -2.7 774,663 + HMPREF1181_RS03045 0.19 -0.5 774,787 - HMPREF1181_RS03045 0.28 -0.5 774,806 + HMPREF1181_RS03045 0.30 -1.1 774,899 - HMPREF1181_RS03045 0.37 -0.6 774,999 - HMPREF1181_RS03045 0.44 -0.2 775,093 + HMPREF1181_RS03045 0.51 -0.9 775,094 - HMPREF1181_RS03045 0.51 -2.7 775,186 + HMPREF1181_RS03045 0.57 +0.2 775,296 + HMPREF1181_RS03045 0.65 -0.9 775,318 + HMPREF1181_RS03045 0.67 -0.6 775,319 - HMPREF1181_RS03045 0.67 -0.1
Or see this region's nucleotide sequence