Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25525 and LU632_RS25530 overlap by 4 nucleotides LU632_RS25530 and LU632_RS25535 are separated by 62 nucleotides LU632_RS25535 and LU632_RS25540 are separated by 48 nucleotides LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides
LU632_RS25525: LU632_RS25525 - alcohol dehydrogenase catalytic domain-containing protein, at 36,774 to 37,847
_RS25525
LU632_RS25530: LU632_RS25530 - HAD family phosphatase, at 37,844 to 38,482
_RS25530
LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690
_RS25535
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
Position (kb) 38
39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 37.556 kb on + strand, within LU632_RS25525 at 37.556 kb on + strand, within LU632_RS25525 at 37.557 kb on - strand, within LU632_RS25525 at 37.599 kb on - strand, within LU632_RS25525 at 37.612 kb on + strand, within LU632_RS25525 at 37.638 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.664 kb on - strand, within LU632_RS25525 at 37.814 kb on + strand at 37.814 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.844 kb on - strand at 37.844 kb on - strand at 37.861 kb on + strand at 37.951 kb on - strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 38.128 kb on + strand, within LU632_RS25530 at 38.129 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.265 kb on + strand, within LU632_RS25530 at 38.266 kb on - strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.490 kb on + strand at 38.520 kb on + strand at 38.521 kb on - strand at 38.521 kb on - strand at 38.523 kb on - strand at 38.538 kb on - strand at 38.541 kb on + strand at 38.541 kb on + strand at 38.585 kb on + strand at 38.585 kb on + strand at 38.586 kb on - strand at 38.588 kb on + strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.645 kb on + strand at 38.646 kb on - strand at 38.672 kb on + strand, within LU632_RS25535 at 38.672 kb on + strand, within LU632_RS25535 at 38.750 kb on + strand, within LU632_RS25535 at 38.847 kb on - strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.020 kb on + strand, within LU632_RS25535 at 39.026 kb on - strand, within LU632_RS25535 at 39.091 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.194 kb on - strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.300 kb on + strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.607 kb on + strand at 39.607 kb on + strand at 39.664 kb on + strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.670 kb on - strand at 39.670 kb on - strand at 39.675 kb on + strand at 39.676 kb on - strand at 39.677 kb on + strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.703 kb on + strand at 39.703 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.719 kb on + strand at 39.719 kb on + strand at 39.720 kb on - strand at 39.720 kb on - strand at 39.736 kb on + strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.809 kb on + strand, within LU632_RS25540 at 39.809 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 37,556 + LU632_RS25525 0.73 -0.9 37,556 + LU632_RS25525 0.73 -1.2 37,557 - LU632_RS25525 0.73 -1.6 37,599 - LU632_RS25525 0.77 -0.4 37,612 + LU632_RS25525 0.78 -1.6 37,638 - LU632_RS25525 0.80 -2.2 37,657 - LU632_RS25525 0.82 +0.0 37,657 - LU632_RS25525 0.82 -1.1 37,664 - LU632_RS25525 0.83 -0.5 37,814 + -2.1 37,814 + -0.9 37,843 + +0.5 37,843 + +2.6 37,843 + +4.2 37,843 + -3.8 37,844 - +0.3 37,844 - +0.5 37,861 + -1.0 37,951 - LU632_RS25530 0.17 -0.2 37,975 + LU632_RS25530 0.21 -0.1 37,975 + LU632_RS25530 0.21 -0.9 37,975 + LU632_RS25530 0.21 -0.0 38,128 + LU632_RS25530 0.44 -0.9 38,129 - LU632_RS25530 0.45 +2.0 38,262 - LU632_RS25530 0.65 +0.7 38,262 - LU632_RS25530 0.65 -1.7 38,265 + LU632_RS25530 0.66 +0.1 38,266 - LU632_RS25530 0.66 -2.8 38,369 + LU632_RS25530 0.82 -0.8 38,369 + LU632_RS25530 0.82 -2.3 38,369 + LU632_RS25530 0.82 +2.9 38,369 + LU632_RS25530 0.82 +0.5 38,370 - LU632_RS25530 0.82 +2.0 38,370 - LU632_RS25530 0.82 -1.3 38,370 - LU632_RS25530 0.82 -2.3 38,370 - LU632_RS25530 0.82 -0.7 38,370 - LU632_RS25530 0.82 -1.3 38,370 - LU632_RS25530 0.82 -0.0 38,370 - LU632_RS25530 0.82 -0.3 38,490 + -0.2 38,520 + -1.0 38,521 - -0.9 38,521 - +0.2 38,523 - -1.3 38,538 - -0.4 38,541 + +0.6 38,541 + +0.7 38,585 + -1.4 38,585 + -1.3 38,586 - -0.3 38,588 + +0.1 38,589 - -0.4 38,589 - +0.5 38,589 - +0.3 38,645 + -1.7 38,646 - -1.1 38,672 + LU632_RS25535 0.11 +0.3 38,672 + LU632_RS25535 0.11 +0.8 38,750 + LU632_RS25535 0.18 -0.3 38,847 - LU632_RS25535 0.26 +0.3 39,008 + LU632_RS25535 0.40 -0.7 39,008 + LU632_RS25535 0.40 +0.6 39,008 + LU632_RS25535 0.40 -1.6 39,009 - LU632_RS25535 0.40 -1.0 39,009 - LU632_RS25535 0.40 -0.4 39,009 - LU632_RS25535 0.40 -1.0 39,009 - LU632_RS25535 0.40 -0.6 39,009 - LU632_RS25535 0.40 +1.8 39,017 + LU632_RS25535 0.41 +1.0 39,017 + LU632_RS25535 0.41 -1.6 39,017 + LU632_RS25535 0.41 +1.1 39,020 + LU632_RS25535 0.41 -0.5 39,026 - LU632_RS25535 0.42 +0.7 39,091 - LU632_RS25535 0.48 -0.1 39,159 - LU632_RS25535 0.54 +1.1 39,159 - LU632_RS25535 0.54 -0.6 39,163 - LU632_RS25535 0.54 -0.5 39,163 - LU632_RS25535 0.54 -0.1 39,163 - LU632_RS25535 0.54 +0.7 39,194 - LU632_RS25535 0.57 +0.1 39,210 + LU632_RS25535 0.58 +2.7 39,210 + LU632_RS25535 0.58 +0.2 39,210 + LU632_RS25535 0.58 +0.4 39,210 + LU632_RS25535 0.58 -0.5 39,211 - LU632_RS25535 0.58 -4.3 39,211 - LU632_RS25535 0.58 +0.7 39,281 - LU632_RS25535 0.64 +0.9 39,281 - LU632_RS25535 0.64 -0.4 39,283 - LU632_RS25535 0.64 +1.2 39,283 - LU632_RS25535 0.64 +1.3 39,283 - LU632_RS25535 0.64 +0.1 39,283 - LU632_RS25535 0.64 +0.6 39,300 + LU632_RS25535 0.66 +0.1 39,337 - LU632_RS25535 0.69 -0.2 39,337 - LU632_RS25535 0.69 -0.3 39,468 + LU632_RS25535 0.81 +0.5 39,468 + LU632_RS25535 0.81 -0.5 39,469 - LU632_RS25535 0.81 -2.8 39,469 - LU632_RS25535 0.81 +1.5 39,607 + +2.1 39,607 + +1.0 39,664 + +0.2 39,665 - +0.3 39,665 - -0.6 39,665 - +1.0 39,670 - -0.9 39,670 - -1.1 39,675 + +4.4 39,676 - +2.5 39,677 + -0.6 39,701 + -3.1 39,701 + -0.9 39,702 - -1.8 39,702 - +3.3 39,702 - -2.6 39,702 - -2.8 39,702 - -1.1 39,702 - +0.1 39,702 - -1.7 39,703 + +1.2 39,703 - -2.2 39,704 - -1.5 39,704 - -1.8 39,704 - -0.9 39,704 - -0.2 39,719 + +1.7 39,719 + -1.3 39,720 - +0.4 39,720 - -2.5 39,736 + +1.7 39,737 - -2.1 39,737 - +0.6 39,737 - +0.7 39,809 + LU632_RS25540 0.12 +0.1 39,809 - LU632_RS25540 0.12 -2.6 39,810 - LU632_RS25540 0.12 -0.6 39,810 - LU632_RS25540 0.12 +1.5 39,810 - LU632_RS25540 0.12 -0.3 40,040 + LU632_RS25540 0.52 +0.1 40,312 - +0.4 40,315 + -0.8 40,321 + -3.7 40,326 + -0.3 40,326 + -1.5 40,354 + -1.6 40,372 + -0.5 40,373 - +0.5 40,455 - +0.8 40,461 + -3.3 40,470 - LU632_RS25545 0.10 -1.0 40,494 + LU632_RS25545 0.24 +1.7 40,665 + +1.1 40,674 + -1.3 40,674 + -0.5 40,674 + -0.5 40,675 - -3.5 40,675 - +0.8 40,675 - +0.7 40,675 - -0.9 40,675 - -0.7 40,675 - -1.4 40,675 - +0.1 40,675 - -2.1
Or see this region's nucleotide sequence