Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25460 and LU632_RS25465 are separated by 418 nucleotides LU632_RS25465 and LU632_RS25470 are separated by 92 nucleotides LU632_RS25470 and LU632_RS25475 overlap by 35 nucleotides LU632_RS25475 and LU632_RS25480 are separated by 505 nucleotides
LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094
_RS25460
LU632_RS25465: LU632_RS25465 - hypothetical protein, at 28,513 to 28,779
_RS25465
LU632_RS25470: LU632_RS25470 - DUF1419 domain-containing protein, at 28,872 to 29,312
_RS25470
LU632_RS25475: LU632_RS25475 - hypothetical protein, at 29,278 to 29,436
_RS25475
LU632_RS25480: LU632_RS25480 - helix-turn-helix domain-containing protein, at 29,942 to 30,181
_RS25480
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.941 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.955 kb on + strand, within LU632_RS25460 at 27.956 kb on - strand, within LU632_RS25460 at 28.077 kb on - strand at 28.077 kb on - strand at 28.083 kb on + strand at 28.083 kb on + strand at 28.084 kb on - strand at 28.116 kb on + strand at 28.116 kb on + strand at 28.117 kb on - strand at 28.117 kb on - strand at 28.484 kb on - strand at 28.511 kb on + strand at 28.653 kb on + strand, within LU632_RS25465 at 28.654 kb on - strand, within LU632_RS25465 at 28.654 kb on - strand, within LU632_RS25465 at 28.784 kb on + strand at 28.785 kb on - strand at 28.785 kb on - strand at 28.785 kb on - strand at 28.898 kb on + strand at 28.919 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.008 kb on + strand, within LU632_RS25470 at 29.009 kb on - strand, within LU632_RS25470 at 29.009 kb on - strand, within LU632_RS25470 at 29.261 kb on + strand, within LU632_RS25470 at 29.746 kb on + strand at 29.747 kb on - strand at 29.747 kb on - strand at 29.908 kb on + strand at 30.032 kb on + strand, within LU632_RS25480 at 30.073 kb on - strand, within LU632_RS25480 at 30.078 kb on + strand, within LU632_RS25480 at 30.118 kb on - strand, within LU632_RS25480 at 30.139 kb on + strand, within LU632_RS25480 at 30.140 kb on - strand, within LU632_RS25480 at 30.218 kb on + strand at 30.218 kb on + strand at 30.289 kb on + strand at 30.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 27,941 + LU632_RS25460 0.82 -0.9 27,955 + LU632_RS25460 0.83 +2.2 27,955 + LU632_RS25460 0.83 +0.3 27,955 + LU632_RS25460 0.83 -3.1 27,956 - LU632_RS25460 0.83 -1.6 28,077 - +0.2 28,077 - +0.8 28,083 + -3.5 28,083 + -0.6 28,084 - +1.0 28,116 + -0.3 28,116 + -0.9 28,117 - +3.3 28,117 - -1.9 28,484 - +1.4 28,511 + -0.5 28,653 + LU632_RS25465 0.52 -1.9 28,654 - LU632_RS25465 0.53 -1.6 28,654 - LU632_RS25465 0.53 -1.3 28,784 + -0.9 28,785 - -1.2 28,785 - -0.3 28,785 - +1.2 28,898 + -2.3 28,919 + LU632_RS25470 0.11 -1.0 29,008 + LU632_RS25470 0.31 -2.5 29,008 + LU632_RS25470 0.31 -2.1 29,008 + LU632_RS25470 0.31 -1.7 29,009 - LU632_RS25470 0.31 +0.1 29,009 - LU632_RS25470 0.31 -0.4 29,261 + LU632_RS25470 0.88 -1.6 29,746 + +0.7 29,747 - +0.7 29,747 - -1.6 29,908 + -0.6 30,032 + LU632_RS25480 0.38 -1.3 30,073 - LU632_RS25480 0.55 -1.3 30,078 + LU632_RS25480 0.57 -2.0 30,118 - LU632_RS25480 0.73 +3.7 30,139 + LU632_RS25480 0.82 -1.6 30,140 - LU632_RS25480 0.82 +1.7 30,218 + +1.2 30,218 + +0.7 30,289 + +0.9 30,289 + -0.3
Or see this region's nucleotide sequence