Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25045

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
4,771,306	+				+1.6
4,771,306	+				-1.9
4,771,306	+				-0.0
4,771,306	+				+1.0
4,771,312	+				+0.0
4,771,312	+				-0.7
4,771,312	+				+1.3
4,771,313	-				-1.3
4,771,361	+		LU632_RS25035	0.12	-1.8
4,771,378	+		LU632_RS25035	0.16	+0.7
4,771,379	-		LU632_RS25035	0.16	-1.7
4,771,502	+		LU632_RS25035	0.44	-2.2
4,771,503	-		LU632_RS25035	0.44	-1.4
4,771,543	+		LU632_RS25035	0.53	-1.4
4,771,717	-				-1.1
4,771,752	-				-0.3
4,771,761	-				-2.4
4,771,810	-		LU632_RS25040	0.13	+0.3
4,771,859	+		LU632_RS25040	0.23	-0.3
4,771,859	+		LU632_RS25040	0.23	-0.8
4,771,859	+		LU632_RS25040	0.23	+0.5
4,771,860	-		LU632_RS25040	0.23	+0.1
4,771,975	+		LU632_RS25040	0.47	-0.2
4,772,038	-		LU632_RS25040	0.59	-2.2
4,772,038	-		LU632_RS25040	0.59	-0.6
4,772,052	-		LU632_RS25040	0.62	+0.4
4,772,063	+		LU632_RS25040	0.64	-1.0
4,772,092	+		LU632_RS25040	0.70	+1.5
4,772,196	+				+0.6
4,772,255	+				+0.5
4,772,404	-		LU632_RS25045	0.28	-0.2
4,772,433	+		LU632_RS25045	0.35	-0.3
4,772,533	+		LU632_RS25045	0.58	-1.1
4,772,588	-		LU632_RS25045	0.71	-1.7
4,772,593	+		LU632_RS25045	0.72	-2.9
4,772,617	+		LU632_RS25045	0.77	-1.7
4,772,618	-		LU632_RS25045	0.77	-0.2
4,772,618	-		LU632_RS25045	0.77	-1.7
4,772,714	-				+1.3
4,772,753	+				-2.1
4,772,766	+				-0.4
4,772,770	+				+0.5
4,772,856	-		LU632_RS25050	0.16	+0.5
4,772,930	-		LU632_RS25050	0.34	+1.3
4,772,930	-		LU632_RS25050	0.34	-1.1
4,772,997	+		LU632_RS25050	0.50	-2.4
4,772,997	+		LU632_RS25050	0.50	-1.9
4,772,997	+		LU632_RS25050	0.50	-0.1
4,772,997	+		LU632_RS25050	0.50	+0.2
4,772,997	+		LU632_RS25050	0.50	+0.7
4,772,999	+		LU632_RS25050	0.50	+0.6
4,773,000	-		LU632_RS25050	0.51	+1.6
4,773,016	-		LU632_RS25050	0.55	+0.3
4,773,016	-		LU632_RS25050	0.55	-0.9
4,773,019	-		LU632_RS25050	0.55	+1.7
4,773,019	-		LU632_RS25050	0.55	-0.7
4,773,065	+		LU632_RS25050	0.66	+1.1
4,773,066	-		LU632_RS25050	0.66	+1.3
4,773,143	+		LU632_RS25050	0.85	-1.1
4,773,143	+		LU632_RS25050	0.85	-2.3
4,773,146	+		LU632_RS25050	0.85	+0.6
4,773,204	+				-1.1
4,773,205	-				-0.5
4,773,495	+				-2.1
4,773,496	-				+0.4
4,773,496	-				-0.2
4,773,498	+				-1.9
4,773,590	+		LU632_RS25060	0.31	+0.8
4,773,590	+		LU632_RS25060	0.31	+1.1
4,773,591	-		LU632_RS25060	0.31	-1.6
4,773,666	+		LU632_RS25060	0.49	+2.8
4,773,667	-		LU632_RS25060	0.49	+3.1
4,773,675	-		LU632_RS25060	0.51	+0.4