Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21795 and LU632_RS21800 are separated by 289 nucleotides LU632_RS21800 and LU632_RS21805 are separated by 63 nucleotides LU632_RS21805 and LU632_RS21810 are separated by 184 nucleotides LU632_RS21810 and yhjD are separated by 82 nucleotides
LU632_RS21795: LU632_RS21795 - IS91 family transposase, at 4,164,354 to 4,165,553
_RS21795
LU632_RS21800: LU632_RS21800 - hypothetical protein, at 4,165,843 to 4,166,016
_RS21800
LU632_RS21805: LU632_RS21805 - IS91 family transposase, at 4,166,080 to 4,167,190
_RS21805
LU632_RS21810: LU632_RS21810 - PhzF family phenazine biosynthesis protein, at 4,167,375 to 4,167,683
_RS21810
LU632_RS21815: yhjD - inner membrane protein YhjD, at 4,167,766 to 4,168,779
yhjD
Position (kb) 4166
4167
4168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4166.285 kb on + strand, within LU632_RS21805 at 4167.357 kb on + strand at 4167.403 kb on + strand at 4167.403 kb on + strand at 4167.404 kb on - strand at 4167.404 kb on - strand at 4167.404 kb on - strand at 4167.404 kb on - strand at 4167.404 kb on - strand at 4167.722 kb on + strand at 4167.728 kb on - strand at 4167.728 kb on - strand at 4167.777 kb on + strand at 4167.816 kb on + strand at 4167.816 kb on + strand at 4167.845 kb on + strand at 4167.846 kb on - strand at 4167.846 kb on - strand at 4167.915 kb on + strand, within yhjD at 4167.936 kb on + strand, within yhjD at 4167.936 kb on + strand, within yhjD at 4167.977 kb on - strand, within yhjD at 4167.977 kb on - strand, within yhjD at 4168.058 kb on + strand, within yhjD at 4168.058 kb on + strand, within yhjD at 4168.077 kb on + strand, within yhjD at 4168.077 kb on + strand, within yhjD at 4168.128 kb on + strand, within yhjD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 4,166,285 + LU632_RS21805 0.18 -0.8 4,167,357 + +0.9 4,167,403 + +2.4 4,167,403 + -0.0 4,167,404 - -0.0 4,167,404 - -1.0 4,167,404 - -2.1 4,167,404 - +2.3 4,167,404 - -1.2 4,167,722 + -0.5 4,167,728 - -0.2 4,167,728 - +0.8 4,167,777 + -0.6 4,167,816 + +1.5 4,167,816 + +3.8 4,167,845 + -3.1 4,167,846 - -0.5 4,167,846 - -2.1 4,167,915 + yhjD LU632_RS21815 0.15 -0.4 4,167,936 + yhjD LU632_RS21815 0.17 -0.9 4,167,936 + yhjD LU632_RS21815 0.17 +0.7 4,167,977 - yhjD LU632_RS21815 0.21 +4.1 4,167,977 - yhjD LU632_RS21815 0.21 -0.5 4,168,058 + yhjD LU632_RS21815 0.29 -0.5 4,168,058 + yhjD LU632_RS21815 0.29 -1.0 4,168,077 + yhjD LU632_RS21815 0.31 -3.4 4,168,077 + yhjD LU632_RS21815 0.31 +1.2 4,168,128 + yhjD LU632_RS21815 0.36 -1.6
Or see this region's nucleotide sequence