Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20370

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,875,926	+				-0.4
3,875,956	+				+3.2
3,875,956	+				-0.8
3,875,956	+				+0.7
3,875,956	+				+2.1
3,875,957	-				-2.3
3,875,957	-				-1.0
3,876,009	-				-0.5
3,876,058	+				+3.0
3,876,062	-				+0.8
3,876,062	-				+0.2
3,876,078	+				-2.1
3,876,078	+				-1.0
3,876,079	-				+1.3
3,876,079	-				+0.9
3,876,092	+				+0.8
3,876,092	+				+0.6
3,876,092	+				+0.2
3,876,093	-				+1.9
3,876,093	-				+0.5
3,876,112	-				+0.4
3,876,149	+				+2.7
3,876,150	-				-1.5
3,876,150	-				-0.8
3,876,151	+				-1.6
3,876,261	+				+0.2
3,876,261	+				+1.2
3,876,308	+				+0.2
3,876,308	+				-0.8
3,876,308	+				-0.0
3,876,309	-				-0.8
3,876,309	-				+1.3
3,876,357	+		LU632_RS20365	0.16	+2.8
3,876,357	+		LU632_RS20365	0.16	-0.4
3,876,358	-		LU632_RS20365	0.16	+0.1
3,876,541	+		LU632_RS20365	0.81	+0.7
3,876,545	+		LU632_RS20365	0.83	+1.5
3,876,546	-		LU632_RS20365	0.83	+1.2
3,876,626	-				-0.6
3,876,847	-		LU632_RS20370	0.22	-0.1
3,876,946	+		LU632_RS20370	0.46	-1.5
3,876,947	-		LU632_RS20370	0.47	-0.8
3,876,947	-		LU632_RS20370	0.47	-0.5
3,876,958	-		LU632_RS20370	0.49	-1.0
3,877,082	+		LU632_RS20370	0.80	-1.9
3,877,094	+		LU632_RS20370	0.83	+0.9
3,877,125	+				-0.4
3,877,126	-				+1.5
3,877,133	+				+0.4
3,877,133	+				-0.5
3,877,133	+				+0.0
3,877,134	-				-1.4
3,877,135	+				-1.4
3,877,135	+				-0.5
3,877,136	-				+0.6
3,877,136	-				-0.1
3,877,262	-		LU632_RS20375	0.31	-0.3
3,877,262	-		LU632_RS20375	0.31	+2.7
3,877,311	+		LU632_RS20375	0.45	-2.0
3,877,311	-		LU632_RS20375	0.45	-0.5
3,877,314	+		LU632_RS20375	0.46	+0.2
3,877,360	+		LU632_RS20375	0.59	-1.8
3,877,361	-		LU632_RS20375	0.60	-1.4
3,877,361	-		LU632_RS20375	0.60	-0.0
3,877,496	+				+2.0
3,877,496	+				+0.7
3,877,496	+				-0.4
3,877,497	-				-1.3
3,877,497	-				-0.8
3,877,500	-				+0.2
3,877,540	+				-0.5
3,877,540	+				-0.8
3,877,552	+				-0.5
3,877,626	+				-2.1
3,877,626	+				+0.1
3,877,697	-				-1.0
3,877,723	+				-0.6
3,877,781	-				+0.4
3,877,798	+				-0.0
3,877,799	-				+4.0
3,877,915	+		LU632_RS20380	0.13	-0.5
3,878,133	-		LU632_RS20380	0.26	+0.4
3,878,142	-		LU632_RS20380	0.27	+0.6
3,878,142	-		LU632_RS20380	0.27	+4.2
3,878,142	-		LU632_RS20380	0.27	+0.1
3,878,144	-		LU632_RS20380	0.27	-0.5
3,878,144	-		LU632_RS20380	0.27	-0.2