Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19475

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,688,717	+	prlC	LU632_RS19470	0.66	-0.1
3,688,718	-	prlC	LU632_RS19470	0.66	+0.2
3,688,750	+	prlC	LU632_RS19470	0.67	+0.2
3,688,768	+	prlC	LU632_RS19470	0.68	+1.2
3,688,769	-	prlC	LU632_RS19470	0.68	+1.2
3,688,922	+	prlC	LU632_RS19470	0.76	-1.1
3,688,922	+	prlC	LU632_RS19470	0.76	+0.2
3,689,132	+	prlC	LU632_RS19470	0.86	+0.6
3,689,132	+	prlC	LU632_RS19470	0.86	+0.2
3,689,133	-	prlC	LU632_RS19470	0.86	-1.6
3,689,133	-	prlC	LU632_RS19470	0.86	-1.1
3,689,134	+	prlC	LU632_RS19470	0.86	-1.4
3,689,135	-	prlC	LU632_RS19470	0.86	+2.2
3,689,164	+	prlC	LU632_RS19470	0.87	+0.6
3,689,201	+	prlC	LU632_RS19470	0.89	+1.2
3,689,435	+				-2.8
3,689,436	-				+0.4
3,689,436	-				-0.6
3,689,436	-				-0.5
3,689,439	+				-0.6
3,689,440	-				-0.5
3,689,513	+				-2.1
3,689,514	-				-1.4
3,689,540	+				-0.4
3,689,550	-				-0.8
3,689,572	+				+0.1
3,689,572	+				-2.1
3,689,583	+				-0.8
3,689,598	+				+0.1
3,689,629	-				+2.6
3,689,629	-				-0.1
3,689,636	+				-0.3
3,689,806	-		LU632_RS19475	0.41	-1.6
3,689,810	+		LU632_RS19475	0.42	-2.2
3,689,810	+		LU632_RS19475	0.42	-0.8
3,689,860	-		LU632_RS19475	0.63	-2.4
3,689,908	+		LU632_RS19475	0.83	-0.8
3,689,908	+		LU632_RS19475	0.83	-1.6
3,689,945	+				-0.1
3,689,945	+				-1.1
3,689,945	+				-1.6
3,689,945	+				-0.8
3,689,946	-				-0.2
3,689,946	-				-1.9
3,689,974	-				+1.6
3,689,974	-				+1.6
3,690,055	-				+1.4
3,690,119	-				+0.6
3,690,283	+		LU632_RS19480	0.20	-1.6
3,690,329	+		LU632_RS19480	0.26	+2.4
3,690,329	+		LU632_RS19480	0.26	-2.2
3,690,434	-		LU632_RS19480	0.40	+0.9
3,690,434	-		LU632_RS19480	0.40	+0.6
3,690,478	-		LU632_RS19480	0.46	-1.1
3,690,480	+		LU632_RS19480	0.46	+1.6
3,690,480	+		LU632_RS19480	0.46	+0.2
3,690,480	+		LU632_RS19480	0.46	+1.2
3,690,480	+		LU632_RS19480	0.46	-1.4
3,690,480	+		LU632_RS19480	0.46	-1.2
3,690,481	-		LU632_RS19480	0.46	+0.5
3,690,481	-		LU632_RS19480	0.46	+1.0
3,690,481	-		LU632_RS19480	0.46	-0.8
3,690,484	+		LU632_RS19480	0.46	+0.5
3,690,484	+		LU632_RS19480	0.46	+2.1
3,690,503	+		LU632_RS19480	0.49	-0.4
3,690,504	-		LU632_RS19480	0.49	-1.1
3,690,504	-		LU632_RS19480	0.49	-2.9
3,690,504	-		LU632_RS19480	0.49	-1.0
3,690,729	+		LU632_RS19480	0.79	+1.0
3,690,852	-				+1.2
3,690,852	-				-0.4