Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19230

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,636,236	+				-0.0
3,636,288	-				-0.8
3,636,288	-				+3.4
3,636,329	-				-1.3
3,637,134	-				+1.4
3,637,134	-				+1.7
3,637,163	+				-0.8
3,637,198	+				-0.1
3,637,199	-				+0.4
3,637,218	-				-0.2
3,637,223	+				-0.5
3,637,223	+				-0.2
3,637,223	+				+0.1
3,637,224	-				-0.5
3,637,224	-				-1.0
3,637,224	-				-0.6
3,637,368	+		LU632_RS19230	0.46	-1.1
3,637,368	+		LU632_RS19230	0.46	-0.9
3,637,369	-		LU632_RS19230	0.46	-0.5
3,637,492	-		LU632_RS19230	0.88	-0.3
3,637,534	+				-0.2
3,637,553	+				-0.1
3,637,553	+				+1.8
3,637,554	-				-0.2
3,637,554	-				+0.9
3,637,554	-				+0.8
3,637,554	-				+0.8
3,637,628	+				-0.4
3,637,628	+				+2.9
3,637,629	-				-1.8
3,637,675	+				+2.0
3,637,716	+				+2.6
3,637,754	+				-0.8
3,637,755	-				+1.1
3,637,760	+				-0.2
3,637,763	-				-0.6
3,637,763	-				-0.1
3,637,763	-				-1.1
3,637,813	-				-0.1
3,637,946	+				-1.6
3,637,946	+				+1.0
3,637,959	-				+0.6
3,638,037	-	livF	LU632_RS19235	0.13	+1.6
3,638,067	+	livF	LU632_RS19235	0.17	-2.5
3,638,089	+	livF	LU632_RS19235	0.20	+0.4
3,638,090	-	livF	LU632_RS19235	0.20	+1.3
3,638,247	+	livF	LU632_RS19235	0.42	-0.0
3,638,248	-	livF	LU632_RS19235	0.43	-1.2
3,638,248	-	livF	LU632_RS19235	0.43	-1.2
3,638,298	-	livF	LU632_RS19235	0.50	+0.1
3,638,369	-	livF	LU632_RS19235	0.60	-0.3
3,638,410	-	livF	LU632_RS19235	0.65	-0.5
3,638,427	+	livF	LU632_RS19235	0.68	-1.9
3,638,428	-	livF	LU632_RS19235	0.68	+0.5
3,638,475	+	livF	LU632_RS19235	0.75	-1.7
3,638,475	+	livF	LU632_RS19235	0.75	-2.3
3,638,488	-	livF	LU632_RS19235	0.76	+0.6
3,638,523	+	livF	LU632_RS19235	0.81	-1.5