Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gntR and gntK are separated by 182 nucleotides gntK and gntU are separated by 9 nucleotides
LU632_RS19160: gntR - gluconate operon transcriptional repressor GntR, at 3,621,551 to 3,622,546
gntR
LU632_RS19165: gntK - gluconokinase, at 3,622,729 to 3,623,262
gntK
LU632_RS19170: gntU - gluconate transporter, at 3,623,272 to 3,624,612
gntU
Position (kb) 3622
3623
3624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3622.077 kb on + strand, within gntR at 3622.078 kb on - strand, within gntR at 3622.151 kb on + strand, within gntR at 3622.286 kb on - strand, within gntR at 3622.419 kb on + strand, within gntR at 3622.554 kb on + strand at 3622.554 kb on + strand at 3622.640 kb on + strand at 3622.640 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on - strand at 3622.730 kb on - strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.735 kb on - strand at 3622.836 kb on + strand, within gntK at 3622.837 kb on - strand, within gntK at 3622.962 kb on + strand, within gntK at 3622.962 kb on + strand, within gntK at 3622.966 kb on - strand, within gntK at 3623.260 kb on + strand at 3623.271 kb on + strand at 3623.271 kb on + strand at 3623.271 kb on + strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.415 kb on + strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.838 kb on + strand, within gntU at 3623.839 kb on - strand, within gntU at 3623.892 kb on + strand, within gntU at 3623.893 kb on - strand, within gntU at 3623.934 kb on + strand, within gntU at 3624.039 kb on - strand, within gntU at 3624.039 kb on - strand, within gntU at 3624.040 kb on + strand, within gntU at 3624.041 kb on - strand, within gntU at 3624.041 kb on - strand, within gntU at 3624.106 kb on + strand, within gntU at 3624.107 kb on - strand, within gntU at 3624.107 kb on - strand, within gntU at 3624.107 kb on - strand, within gntU
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 3,622,077 + gntR LU632_RS19160 0.53 -1.5 3,622,078 - gntR LU632_RS19160 0.53 +0.1 3,622,151 + gntR LU632_RS19160 0.60 -1.6 3,622,286 - gntR LU632_RS19160 0.74 -1.3 3,622,419 + gntR LU632_RS19160 0.87 +1.1 3,622,554 + -1.2 3,622,554 + +1.9 3,622,640 + -2.3 3,622,640 + -1.9 3,622,728 + +2.1 3,622,728 + -0.9 3,622,728 + -0.1 3,622,728 + +1.4 3,622,728 + +0.7 3,622,728 + -1.0 3,622,728 - +2.0 3,622,730 - -0.3 3,622,734 + -1.7 3,622,734 + +0.6 3,622,734 + +0.1 3,622,734 + -0.1 3,622,735 - +1.4 3,622,836 + gntK LU632_RS19165 0.20 -0.2 3,622,837 - gntK LU632_RS19165 0.20 -0.9 3,622,962 + gntK LU632_RS19165 0.44 +0.8 3,622,962 + gntK LU632_RS19165 0.44 +0.1 3,622,966 - gntK LU632_RS19165 0.44 -1.8 3,623,260 + -1.7 3,623,271 + +0.8 3,623,271 + -1.0 3,623,271 + +1.5 3,623,272 - +3.7 3,623,272 - +0.1 3,623,272 - -2.6 3,623,272 - -0.1 3,623,272 - +1.3 3,623,415 + gntU LU632_RS19170 0.11 -2.1 3,623,579 - gntU LU632_RS19170 0.23 -0.7 3,623,579 - gntU LU632_RS19170 0.23 +0.5 3,623,579 - gntU LU632_RS19170 0.23 +0.1 3,623,838 + gntU LU632_RS19170 0.42 -0.3 3,623,839 - gntU LU632_RS19170 0.42 +0.5 3,623,892 + gntU LU632_RS19170 0.46 -2.2 3,623,893 - gntU LU632_RS19170 0.46 +1.7 3,623,934 + gntU LU632_RS19170 0.49 -2.5 3,624,039 - gntU LU632_RS19170 0.57 +1.1 3,624,039 - gntU LU632_RS19170 0.57 -2.7 3,624,040 + gntU LU632_RS19170 0.57 +1.1 3,624,041 - gntU LU632_RS19170 0.57 +2.1 3,624,041 - gntU LU632_RS19170 0.57 -0.9 3,624,106 + gntU LU632_RS19170 0.62 -3.1 3,624,107 - gntU LU632_RS19170 0.62 +2.7 3,624,107 - gntU LU632_RS19170 0.62 +1.1 3,624,107 - gntU LU632_RS19170 0.62 -0.5
Or see this region's nucleotide sequence