Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18475

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,491,058	-		LU632_RS18470	0.28	+0.7
3,491,190	+		LU632_RS18470	0.39	+2.7
3,491,190	+		LU632_RS18470	0.39	+0.6
3,491,190	+		LU632_RS18470	0.39	+0.3
3,491,190	+		LU632_RS18470	0.39	-2.1
3,491,190	+		LU632_RS18470	0.39	-0.7
3,491,191	-		LU632_RS18470	0.39	+1.1
3,491,343	-		LU632_RS18470	0.53	+0.7
3,491,343	-		LU632_RS18470	0.53	+2.1
3,491,374	+		LU632_RS18470	0.56	+0.6
3,491,602	+		LU632_RS18470	0.76	-0.2
3,491,856	-				-0.2
3,492,072	-		LU632_RS18475	0.22	-1.0
3,492,144	-		LU632_RS18475	0.34	-0.7
3,492,298	-		LU632_RS18475	0.60	-3.4
3,493,000	+		LU632_RS18480	0.46	-0.6
3,493,046	+		LU632_RS18480	0.53	+0.1
3,493,047	-		LU632_RS18480	0.54	-1.0
3,493,047	-		LU632_RS18480	0.54	+0.9
3,493,057	-		LU632_RS18480	0.55	+0.8
3,493,079	+		LU632_RS18480	0.59	-0.1
3,493,095	-		LU632_RS18480	0.62	-0.7
3,493,095	-		LU632_RS18480	0.62	-2.1
3,493,143	+		LU632_RS18480	0.70	-1.0
3,493,186	-		LU632_RS18480	0.77	+1.6
3,493,206	-		LU632_RS18480	0.81	+1.1
3,493,206	-		LU632_RS18480	0.81	-0.0
3,493,243	+		LU632_RS18480	0.87	-0.8
3,493,244	-		LU632_RS18480	0.87	-0.9
3,493,244	-		LU632_RS18480	0.87	+1.0
3,493,244	-		LU632_RS18480	0.87	-2.4
3,493,244	-		LU632_RS18480	0.87	+0.1
3,493,244	-		LU632_RS18480	0.87	+0.5
3,493,297	-				-0.5
3,493,326	+				-2.3
3,493,326	+				-0.5
3,493,326	+				-1.7
3,493,328	+				-1.3
3,493,329	-				+1.2
3,493,336	+				+1.4
3,493,337	-				-0.1
3,493,337	-				-0.5
3,493,446	+				+1.8
3,493,446	+				+2.1
3,493,446	+				+0.1
3,493,447	-				+0.6
3,493,447	-				+2.5
3,493,447	-				+1.8
3,493,448	+				-3.5
3,493,448	+				-1.5
3,493,448	+				-0.5
3,493,449	-				+1.3