Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18215

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,441,402	+		LU632_RS18205	0.61	+0.7
3,441,403	-		LU632_RS18205	0.61	-0.9
3,441,403	-		LU632_RS18205	0.61	+2.8
3,441,403	-		LU632_RS18205	0.61	-2.4
3,441,406	+		LU632_RS18205	0.61	-3.6
3,441,406	+		LU632_RS18205	0.61	+1.3
3,441,406	+		LU632_RS18205	0.61	+2.7
3,441,407	-		LU632_RS18205	0.61	-1.9
3,441,407	-		LU632_RS18205	0.61	-0.7
3,441,408	+		LU632_RS18205	0.61	-0.7
3,441,450	+		LU632_RS18205	0.67	-0.8
3,441,516	+		LU632_RS18205	0.76	+0.4
3,441,554	+		LU632_RS18205	0.81	-2.2
3,441,558	+		LU632_RS18205	0.82	+1.5
3,441,828	-		LU632_RS18210	0.45	+1.6
3,441,837	+		LU632_RS18210	0.47	+0.4
3,441,979	-		LU632_RS18210	0.80	-0.2
3,442,007	+		LU632_RS18210	0.87	+0.0
3,442,008	-		LU632_RS18210	0.87	+1.2
3,442,045	+				-0.3
3,442,045	+				-1.2
3,442,045	+				-1.5
3,442,045	+				+1.7
3,442,154	+				+0.0
3,442,155	-				+1.1
3,442,155	-				+1.2
3,442,200	+				+1.1
3,442,218	+				-0.8
3,442,229	+				+1.2
3,442,378	+		LU632_RS18215	0.43	-2.5
3,442,379	-		LU632_RS18215	0.43	+0.9
3,442,383	+		LU632_RS18215	0.46	+1.1
3,442,387	+		LU632_RS18215	0.49	-1.2
3,442,388	-		LU632_RS18215	0.50	-1.4
3,442,412	-		LU632_RS18215	0.67	-1.2
3,442,616	-				+3.4
3,442,620	-				+0.2
3,442,838	-				-2.1