Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17805

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,353,700	-				+1.7
3,353,778	-				+0.5
3,353,778	-				+2.7
3,353,820	-	rodZ	LU632_RS17805	0.12	-1.9
3,353,932	-	rodZ	LU632_RS17805	0.23	-2.8
3,354,890	-	pilW	LU632_RS17810	0.27	-0.8
3,355,136	-	pilW	LU632_RS17810	0.60	+1.7
3,355,143	-	pilW	LU632_RS17810	0.61	+2.8
3,355,143	-	pilW	LU632_RS17810	0.61	+0.0
3,355,143	-	pilW	LU632_RS17810	0.61	+3.3
3,355,182	+	pilW	LU632_RS17810	0.66	-0.6
3,355,182	+	pilW	LU632_RS17810	0.66	-0.0
3,355,183	-	pilW	LU632_RS17810	0.67	+0.1
3,355,242	+	pilW	LU632_RS17810	0.75	-0.9
3,355,243	-	pilW	LU632_RS17810	0.75	-0.4
3,355,243	-	pilW	LU632_RS17810	0.75	-0.5
3,355,324	-	pilW	LU632_RS17810	0.86	-1.4
3,355,617	-				-2.7
3,355,635	-		LU632_RS17815	0.10	-0.4
3,355,643	+		LU632_RS17815	0.11	-1.0
3,355,644	-		LU632_RS17815	0.11	-2.2
3,355,647	-		LU632_RS17815	0.11	-0.2
3,355,649	+		LU632_RS17815	0.12	-0.8