Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16965

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,198,782	-	pheA	LU632_RS16960	0.32	+0.1
3,198,804	+	pheA	LU632_RS16960	0.34	+1.1
3,198,871	+	pheA	LU632_RS16960	0.39	-0.3
3,198,932	+	pheA	LU632_RS16960	0.45	-0.5
3,198,952	-	pheA	LU632_RS16960	0.46	+1.1
3,198,952	-	pheA	LU632_RS16960	0.46	-0.9
3,198,989	+	pheA	LU632_RS16960	0.49	+0.1
3,199,013	+	pheA	LU632_RS16960	0.52	+1.1
3,199,014	-	pheA	LU632_RS16960	0.52	+1.1
3,199,102	+	pheA	LU632_RS16960	0.59	+1.1
3,199,103	-	pheA	LU632_RS16960	0.59	+0.1
3,199,194	-	pheA	LU632_RS16960	0.67	+1.7
3,199,194	-	pheA	LU632_RS16960	0.67	+0.1
3,199,194	-	pheA	LU632_RS16960	0.67	-0.8
3,199,208	+	pheA	LU632_RS16960	0.68	+2.3
3,199,208	+	pheA	LU632_RS16960	0.68	+1.5
3,199,209	-	pheA	LU632_RS16960	0.68	-1.5
3,199,209	-	pheA	LU632_RS16960	0.68	-0.7
3,199,243	+	pheA	LU632_RS16960	0.71	+0.6
3,199,243	+	pheA	LU632_RS16960	0.71	-0.5
3,199,245	+	pheA	LU632_RS16960	0.71	-1.9
3,199,245	+	pheA	LU632_RS16960	0.71	-1.3
3,199,246	-	pheA	LU632_RS16960	0.72	+0.4
3,199,255	-	pheA	LU632_RS16960	0.72	+1.1
3,199,283	+	pheA	LU632_RS16960	0.75	+0.4
3,199,283	+	pheA	LU632_RS16960	0.75	-2.5
3,199,349	+	pheA	LU632_RS16960	0.80	-0.9
3,199,350	-	pheA	LU632_RS16960	0.81	+0.3
3,199,350	-	pheA	LU632_RS16960	0.81	+1.5
3,199,378	-	pheA	LU632_RS16960	0.83	-1.9
3,199,378	-	pheA	LU632_RS16960	0.83	+1.1
3,199,378	-	pheA	LU632_RS16960	0.83	+1.5
3,199,382	+	pheA	LU632_RS16960	0.83	+0.3
3,199,621	-				-0.8
3,199,670	+				+1.1
3,199,670	+				+1.6
3,199,693	+				+1.1
3,199,740	+				+1.3
3,200,045	-	grcA	LU632_RS16965	0.76	-1.3
3,200,045	-	grcA	LU632_RS16965	0.76	-1.4
3,200,137	+				-1.5
3,200,138	-				+1.7
3,200,154	+				-0.2
3,200,154	+				+0.2
3,200,158	+				+2.5
3,200,158	+				-1.4
3,200,158	+				-1.3
3,200,217	-				-0.1
3,200,218	+				-0.2
3,200,219	-				+0.2
3,200,219	-				+0.2
3,200,220	+				+0.2
3,200,220	+				-2.3
3,200,221	-				-1.3
3,200,402	+				+0.1
3,200,403	-				+0.3
3,200,499	-	ung	LU632_RS16970	0.11	-0.9
3,200,553	-	ung	LU632_RS16970	0.19	+2.7
3,200,579	+	ung	LU632_RS16970	0.23	-2.4
3,200,579	+	ung	LU632_RS16970	0.23	+0.7
3,200,583	+	ung	LU632_RS16970	0.24	-1.1
3,200,584	-	ung	LU632_RS16970	0.24	-0.9
3,200,588	+	ung	LU632_RS16970	0.24	-1.3
3,200,589	-	ung	LU632_RS16970	0.25	-0.9
3,200,695	-	ung	LU632_RS16970	0.40	+0.7
3,200,699	-	ung	LU632_RS16970	0.41	-0.3
3,200,700	+	ung	LU632_RS16970	0.41	-0.4
3,200,777	+	ung	LU632_RS16970	0.52	-0.3
3,200,780	+	ung	LU632_RS16970	0.53	+1.8
3,200,780	+	ung	LU632_RS16970	0.53	+2.4
3,200,780	+	ung	LU632_RS16970	0.53	-1.7
3,200,783	+	ung	LU632_RS16970	0.53	-1.3
3,200,788	-	ung	LU632_RS16970	0.54	+0.3
3,200,854	-	ung	LU632_RS16970	0.64	-0.5
3,200,868	-	ung	LU632_RS16970	0.66	+1.0
3,200,876	+	ung	LU632_RS16970	0.67	+1.2
3,200,901	-	ung	LU632_RS16970	0.71	-2.4
3,200,944	-	ung	LU632_RS16970	0.77	+1.3
3,200,962	+	ung	LU632_RS16970	0.80	-1.1
3,201,040	-				+0.4
3,201,098	-				+2.2