Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16555

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,133,499	+		LU632_RS16540	0.35	-2.2
3,133,499	+		LU632_RS16540	0.35	+1.4
3,133,500	-		LU632_RS16540	0.35	-3.2
3,133,648	+				+2.1
3,133,648	+				-0.9
3,133,928	+		LU632_RS16545	0.54	+0.5
3,134,035	+		LU632_RS16545	0.73	+0.4
3,134,035	+		LU632_RS16545	0.73	+1.0
3,134,035	+		LU632_RS16545	0.73	-0.2
3,134,035	+		LU632_RS16545	0.73	-0.3
3,134,036	-		LU632_RS16545	0.73	+0.6
3,134,323	-		LU632_RS16550	0.79	+1.6
3,134,326	-		LU632_RS16550	0.81	-1.7
3,134,461	+		LU632_RS16555	0.22	-0.5
3,134,473	-		LU632_RS16555	0.28	-2.0
3,134,513	+		LU632_RS16555	0.48	-1.5
3,134,735	+		LU632_RS16560	0.30	+2.1
3,134,736	-		LU632_RS16560	0.30	-0.9
3,134,877	+		LU632_RS16560	0.71	-2.5
3,135,090	+		LU632_RS16565	0.68	-0.5
3,135,091	-		LU632_RS16565	0.68	-1.5
3,135,114	-		LU632_RS16565	0.80	-2.5
3,135,283	+		LU632_RS16570	0.45	-0.2
3,135,514	+		LU632_RS16575	0.75	+0.1
3,135,522	+		LU632_RS16575	0.79	-0.9
3,135,522	+		LU632_RS16575	0.79	+0.3
3,135,526	+		LU632_RS16575	0.81	-1.3
3,135,527	-		LU632_RS16575	0.81	-2.8
3,135,546	+				-0.9
3,135,547	-				-0.1
3,135,549	+				+0.6
3,135,553	+				-1.5
3,135,573	+				+1.6
3,135,574	-				+2.3
3,135,574	-				+1.4
3,135,596	+				+1.4
3,135,606	+				-0.2