Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15950

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
3,013,846	-		LU632_RS15945	0.19	-1.3
3,014,250	-				-1.5
3,014,258	-				+1.7
3,014,261	+				+5.2
3,014,261	+				+1.9
3,014,472	-		LU632_RS15950	0.30	-1.0
3,014,512	+		LU632_RS15950	0.38	-0.5
3,014,575	+		LU632_RS15950	0.51	+1.1
3,014,575	+		LU632_RS15950	0.51	+3.1
3,014,599	+		LU632_RS15950	0.56	-1.9
3,014,600	-		LU632_RS15950	0.56	-1.7
3,014,699	+		LU632_RS15950	0.76	-1.7
3,014,728	-		LU632_RS15950	0.82	-1.3
3,014,811	+				+3.1
3,014,814	+				-1.2
3,014,815	-				-0.4
3,014,907	+				-2.0
3,014,947	+	pnuC	LU632_RS15955	0.11	-0.5
3,015,000	+	pnuC	LU632_RS15955	0.19	-1.3
3,015,156	-	pnuC	LU632_RS15955	0.41	+0.1
3,015,202	+	pnuC	LU632_RS15955	0.47	+2.7
3,015,203	-	pnuC	LU632_RS15955	0.47	+1.8
3,015,203	-	pnuC	LU632_RS15955	0.47	+0.1
3,015,203	-	pnuC	LU632_RS15955	0.47	-1.7
3,015,230	+	pnuC	LU632_RS15955	0.51	-0.5
3,015,230	+	pnuC	LU632_RS15955	0.51	-0.9
3,015,231	-	pnuC	LU632_RS15955	0.51	+1.5
3,015,234	+	pnuC	LU632_RS15955	0.51	-0.7
3,015,322	+	pnuC	LU632_RS15955	0.64	+2.7
3,015,323	-	pnuC	LU632_RS15955	0.64	+1.2
3,015,332	-	pnuC	LU632_RS15955	0.65	+1.6
3,015,332	-	pnuC	LU632_RS15955	0.65	-1.1
3,015,332	-	pnuC	LU632_RS15955	0.65	+0.7
3,015,336	-	pnuC	LU632_RS15955	0.66	+1.6
3,015,363	+	pnuC	LU632_RS15955	0.70	-0.8
3,015,376	+	pnuC	LU632_RS15955	0.71	+0.4
3,015,376	+	pnuC	LU632_RS15955	0.71	+0.8
3,015,419	+	pnuC	LU632_RS15955	0.77	+0.3
3,015,440	+	pnuC	LU632_RS15955	0.80	+1.1
3,015,497	+	pnuC	LU632_RS15955	0.88	-0.4
3,015,543	-				-0.9
3,015,543	-				-1.9
3,015,557	+				+1.9
3,015,647	+				-0.6
3,015,647	+				-0.4
3,015,647	+				+1.1
3,015,648	-				+0.9
3,015,648	-				+1.2
3,015,682	-				+0.4
3,015,743	+	nadA	LU632_RS15960	0.12	-0.9
3,015,743	+	nadA	LU632_RS15960	0.12	+1.2