Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13535

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
2,582,501	+	cheR	LU632_RS13530	0.29	-1.7
2,582,595	+	cheR	LU632_RS13530	0.40	+1.3
2,582,595	+	cheR	LU632_RS13530	0.40	+1.9
2,582,646	-	cheR	LU632_RS13530	0.45	-0.2
2,582,662	+	cheR	LU632_RS13530	0.47	+0.5
2,582,663	-	cheR	LU632_RS13530	0.47	-0.7
2,582,722	+	cheR	LU632_RS13530	0.54	-0.2
2,582,763	-	cheR	LU632_RS13530	0.59	-0.7
2,582,886	-	cheR	LU632_RS13530	0.73	-2.1
2,582,963	-	cheR	LU632_RS13530	0.82	-1.9
2,583,011	-	cheR	LU632_RS13530	0.87	-1.5
2,583,032	+	cheR	LU632_RS13530	0.90	-0.5
2,583,124	+				+3.1
2,583,124	+				+1.1
2,583,125	-				-1.7
2,583,125	-				-0.8
2,583,143	-				-1.1
2,583,181	+				-1.8
2,583,305	-				+1.9
2,583,364	+		LU632_RS13535	0.13	-1.7
2,583,365	-		LU632_RS13535	0.13	+0.3
2,583,643	+		LU632_RS13535	0.31	+0.7
2,583,644	-		LU632_RS13535	0.31	+0.1
2,583,644	-		LU632_RS13535	0.31	-1.7
2,583,644	-		LU632_RS13535	0.31	+0.8
2,583,644	-		LU632_RS13535	0.31	+0.3
2,583,682	-		LU632_RS13535	0.33	-0.1
2,583,684	+		LU632_RS13535	0.33	-1.1
2,583,714	+		LU632_RS13535	0.35	-1.5
2,583,714	+		LU632_RS13535	0.35	-0.6
2,583,715	-		LU632_RS13535	0.35	-1.4
2,584,081	-		LU632_RS13535	0.58	-1.3
2,584,275	-		LU632_RS13535	0.70	-2.3
2,584,349	+		LU632_RS13535	0.74	-0.7
2,584,350	-		LU632_RS13535	0.74	-0.7
2,584,353	+		LU632_RS13535	0.75	+0.2
2,584,354	-		LU632_RS13535	0.75	+0.5
2,584,354	-		LU632_RS13535	0.75	-1.1
2,584,354	-		LU632_RS13535	0.75	+0.7
2,584,379	+		LU632_RS13535	0.76	+1.2
2,584,380	-		LU632_RS13535	0.76	-2.4
2,584,380	-		LU632_RS13535	0.76	+0.7
2,584,380	-		LU632_RS13535	0.76	+0.9
2,584,380	-		LU632_RS13535	0.76	+2.1
2,584,380	-		LU632_RS13535	0.76	+1.6
2,584,412	-		LU632_RS13535	0.78	-1.4
2,584,510	+		LU632_RS13535	0.84	+0.6
2,584,513	+		LU632_RS13535	0.85	-0.8
2,584,579	+		LU632_RS13535	0.89	+0.5
2,584,644	+				-0.7
2,584,763	+				-1.9
2,584,764	-				-0.8
2,584,764	-				-0.6
2,584,776	+				+0.2
2,584,800	+				-1.3
2,584,801	-				+2.5
2,584,903	-				-0.1
2,584,905	+				-0.9
2,584,942	+				-0.1
2,585,152	-		LU632_RS13540	0.21	-3.0
2,585,160	+		LU632_RS13540	0.21	-0.2
2,585,160	+		LU632_RS13540	0.21	-2.5
2,585,160	+		LU632_RS13540	0.21	-1.1
2,585,271	+		LU632_RS13540	0.28	-2.4
2,585,275	+		LU632_RS13540	0.28	-0.8
2,585,275	+		LU632_RS13540	0.28	+1.1
2,585,275	+		LU632_RS13540	0.28	+1.4
2,585,276	-		LU632_RS13540	0.28	+2.5
2,585,355	+		LU632_RS13540	0.33	-0.8
2,585,356	-		LU632_RS13540	0.33	-0.6
2,585,490	+		LU632_RS13540	0.41	+0.9
2,585,491	-		LU632_RS13540	0.41	-2.4
2,585,652	-		LU632_RS13540	0.50	+0.1
2,585,655	+		LU632_RS13540	0.51	-1.7