Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13115

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
2,502,333	+		LU632_RS13105	0.60	+3.0
2,502,334	-		LU632_RS13105	0.60	-1.1
2,502,397	+		LU632_RS13105	0.70	+0.9
2,502,398	-		LU632_RS13105	0.70	-0.5
2,502,407	-		LU632_RS13105	0.71	-0.6
2,502,437	-		LU632_RS13105	0.76	-0.0
2,502,438	+		LU632_RS13105	0.76	-1.1
2,502,439	-		LU632_RS13105	0.76	-0.6
2,502,522	-		LU632_RS13105	0.88	+0.9
2,502,526	-		LU632_RS13105	0.89	+2.8
2,502,541	+				+2.0
2,502,541	+				-0.9
2,502,546	+				-2.4
2,502,546	+				-1.1
2,502,547	-				-0.6
2,502,547	-				-1.3
2,502,562	+				-1.6
2,502,563	-				-1.9
2,502,594	-				+0.8
2,502,597	+				+1.1
2,502,597	+				+0.1
2,502,597	+				+0.3
2,502,598	-				-0.4
2,502,671	+				-0.9
2,502,671	+				+2.0
2,502,700	+				-2.7
2,502,700	+				-1.9
2,502,700	+				-0.7
2,502,701	-				-0.1
2,502,701	-				-0.2
2,502,701	-				-1.2
2,502,762	+				+1.4
2,502,763	-				-0.9
2,502,781	+				-1.7
2,502,787	-				-2.5
2,502,787	-				-0.7
2,502,825	-				+0.3
2,502,952	-		LU632_RS13110	0.38	-1.6
2,502,974	+		LU632_RS13110	0.46	-0.2
2,503,106	-				+2.4
2,503,171	-				-1.0
2,503,174	+				+0.2
2,503,175	-				-1.1
2,503,175	-				-1.1
2,503,194	+				-1.4
2,503,194	+				+0.4
2,503,200	+				-1.3
2,503,259	-				-0.3
2,503,337	+				+0.2
2,503,337	+				-0.8
2,503,338	-				-0.3
2,503,359	-	minC	LU632_RS13115	0.12	+0.1
2,503,470	-	minC	LU632_RS13115	0.28	-0.1
2,503,470	-	minC	LU632_RS13115	0.28	-1.6
2,503,548	-	minC	LU632_RS13115	0.39	-1.1
2,503,690	+	minC	LU632_RS13115	0.59	+0.1
2,503,758	+	minC	LU632_RS13115	0.69	-1.7
2,503,759	-	minC	LU632_RS13115	0.69	-0.9
2,503,761	+	minC	LU632_RS13115	0.70	-0.5
2,503,761	+	minC	LU632_RS13115	0.70	-1.9
2,503,762	-	minC	LU632_RS13115	0.70	-1.3
2,503,767	+	minC	LU632_RS13115	0.70	+0.0
2,503,771	+	minC	LU632_RS13115	0.71	+0.4
2,503,838	-	minC	LU632_RS13115	0.81	-1.0
2,503,856	+	minC	LU632_RS13115	0.83	-1.3
2,503,863	+	minC	LU632_RS13115	0.84	-0.9
2,503,876	+	minC	LU632_RS13115	0.86	-2.4
2,503,955	+				-1.4
2,504,010	+				+2.1
2,504,011	-				-1.5
2,504,027	+				-0.2
2,504,143	-	minD	LU632_RS13120	0.16	+0.9
2,504,153	+	minD	LU632_RS13120	0.17	-0.8
2,504,154	-	minD	LU632_RS13120	0.18	-1.5
2,504,231	+	minD	LU632_RS13120	0.27	+2.7
2,504,359	-	minD	LU632_RS13120	0.43	+0.9
2,504,430	+	minD	LU632_RS13120	0.52	-2.9
2,504,430	+	minD	LU632_RS13120	0.52	-2.0
2,504,430	+	minD	LU632_RS13120	0.52	-0.1
2,504,431	-	minD	LU632_RS13120	0.52	-3.1
2,504,557	+	minD	LU632_RS13120	0.67	-0.6
2,504,558	-	minD	LU632_RS13120	0.67	-1.2
2,504,587	-	minD	LU632_RS13120	0.71	-1.0
2,504,592	-	minD	LU632_RS13120	0.71	-2.8
2,504,592	-	minD	LU632_RS13120	0.71	+1.0
2,504,606	+	minD	LU632_RS13120	0.73	-0.3
2,504,607	-	minD	LU632_RS13120	0.73	-1.1
2,504,618	+	minD	LU632_RS13120	0.75	+0.9
2,504,718	+	minD	LU632_RS13120	0.87	-1.1
2,504,719	-	minD	LU632_RS13120	0.87	-0.1