Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12825

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
2,440,820	+				+1.0
2,440,911	-		LU632_RS12825	0.31	-1.4
2,441,004	+		LU632_RS12825	0.67	-2.4
2,441,005	-		LU632_RS12825	0.67	-0.7
2,441,098	+				+1.8
2,441,159	-				-0.5
2,441,164	+				+0.9
2,441,165	-				-0.6
2,441,199	+				-0.8
2,441,200	-				+0.5
2,441,201	+				-0.6
2,441,283	-		LU632_RS12830	0.16	+1.3
2,441,286	-		LU632_RS12830	0.17	+0.4
2,441,306	+		LU632_RS12830	0.20	+0.2
2,441,307	-		LU632_RS12830	0.20	-1.1
2,441,319	+		LU632_RS12830	0.21	-2.0
2,441,415	+		LU632_RS12830	0.35	+1.2
2,441,450	+		LU632_RS12830	0.39	-0.0
2,441,451	-		LU632_RS12830	0.40	-0.5
2,441,456	+		LU632_RS12830	0.40	-1.3
2,441,456	+		LU632_RS12830	0.40	-1.6
2,441,505	-		LU632_RS12830	0.47	+4.8
2,441,513	+		LU632_RS12830	0.48	+0.1
2,441,559	+		LU632_RS12830	0.54	-0.8
2,441,571	-		LU632_RS12830	0.56	-0.6
2,441,571	-		LU632_RS12830	0.56	-0.6
2,441,795	-		LU632_RS12830	0.87	-1.4
2,441,829	-				+0.7
2,441,892	-				+0.4
2,441,892	-				+1.5
2,441,903	+				-2.0
2,441,904	-				-1.4
2,441,906	-				+1.3
2,441,906	-				+1.0
2,441,906	-				+0.5
2,441,906	-				-0.6
2,441,910	-				+0.4
2,441,925	+				+1.3
2,441,935	+				-0.2
2,441,995	+				-0.0
2,442,048	-				-0.1
2,442,080	-				-1.5