Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11565

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
2,202,696	-	pspB	LU632_RS11555	0.67	-0.5
2,202,737	-	pspB	LU632_RS11555	0.85	-1.0
2,202,761	-				-0.6
2,202,761	-				+2.7
2,202,790	-				+1.2
2,202,811	+				+2.0
2,202,814	+				+0.7
2,202,947	+	pspA	LU632_RS11560	0.20	-0.4
2,202,948	-	pspA	LU632_RS11560	0.20	-0.5
2,202,948	-	pspA	LU632_RS11560	0.20	+0.3
2,203,114	-	pspA	LU632_RS11560	0.45	+1.0
2,203,433	+				-0.3
2,203,434	-				-0.6
2,203,434	-				-0.3
2,203,578	-				+2.1
2,203,920	+	pspF	LU632_RS11565	0.28	-2.8
2,203,920	+	pspF	LU632_RS11565	0.28	-0.0
2,203,920	+	pspF	LU632_RS11565	0.28	+3.0
2,204,197	+	pspF	LU632_RS11565	0.55	+2.8
2,204,197	+	pspF	LU632_RS11565	0.55	-0.9
2,204,396	-	pspF	LU632_RS11565	0.75	+2.6
2,204,421	-	pspF	LU632_RS11565	0.78	+1.0
2,204,422	+	pspF	LU632_RS11565	0.78	-0.0
2,204,422	+	pspF	LU632_RS11565	0.78	+4.8
2,204,460	+	pspF	LU632_RS11565	0.82	-0.5
2,204,461	-	pspF	LU632_RS11565	0.82	-1.0
2,204,461	-	pspF	LU632_RS11565	0.82	-1.1
2,204,461	-	pspF	LU632_RS11565	0.82	-2.1
2,204,481	+	pspF	LU632_RS11565	0.84	-0.7
2,204,517	+	pspF	LU632_RS11565	0.87	-0.1
2,204,582	+				-0.0
2,204,583	-				-0.9
2,204,614	+				-2.7
2,204,614	+				-0.3
2,204,726	+				+0.9
2,204,810	+				+0.1
2,204,929	+				-0.7
2,205,020	+				-0.5
2,205,156	-				+0.6
2,205,160	+				-1.3
2,205,160	+				+2.2
2,205,171	-				+1.4
2,205,244	+				-2.0
2,205,556	-	sapA	LU632_RS11570	0.21	-2.0
2,205,617	+	sapA	LU632_RS11570	0.24	+0.3