Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10590 and LU632_RS10595 are separated by 57 nucleotides LU632_RS10595 and LU632_RS10600 are separated by 128 nucleotides LU632_RS10600 and LU632_RS10605 are separated by 367 nucleotides LU632_RS10605 and LU632_RS10610 are separated by 41 nucleotides
LU632_RS10590: LU632_RS10590 - helix-turn-helix domain-containing protein, at 2,023,732 to 2,024,755
_RS10590
LU632_RS10595: LU632_RS10595 - tail fiber assembly protein, at 2,024,813 to 2,024,938
_RS10595
LU632_RS10600: LU632_RS10600 - hypothetical protein, at 2,025,067 to 2,025,291
_RS10600
LU632_RS10605: LU632_RS10605 - hypothetical protein, at 2,025,659 to 2,026,027
_RS10605
LU632_RS10610: LU632_RS10610 - hypothetical protein, at 2,026,069 to 2,026,383
_RS10610
Position (kb)
2025
2026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2024.807 kb on + strand at 2024.807 kb on + strand at 2024.872 kb on + strand, within LU632_RS10595 at 2024.893 kb on + strand, within LU632_RS10595 at 2024.937 kb on - strand at 2025.063 kb on + strand at 2025.176 kb on + strand, within LU632_RS10600 at 2025.176 kb on + strand, within LU632_RS10600 at 2025.177 kb on - strand, within LU632_RS10600 at 2025.177 kb on - strand, within LU632_RS10600 at 2025.256 kb on + strand, within LU632_RS10600 at 2025.335 kb on + strand at 2025.336 kb on - strand at 2025.420 kb on + strand at 2025.461 kb on + strand at 2025.461 kb on + strand at 2025.462 kb on - strand at 2025.462 kb on - strand at 2025.462 kb on - strand at 2025.473 kb on - strand at 2025.550 kb on + strand at 2025.582 kb on + strand at 2025.582 kb on + strand at 2025.582 kb on + strand at 2025.582 kb on + strand at 2025.618 kb on - strand at 2025.618 kb on - strand at 2025.625 kb on + strand at 2025.625 kb on + strand at 2025.679 kb on + strand at 2025.704 kb on - strand, within LU632_RS10605 at 2025.704 kb on - strand, within LU632_RS10605 at 2025.754 kb on + strand, within LU632_RS10605 at 2025.755 kb on - strand, within LU632_RS10605 at 2025.761 kb on - strand, within LU632_RS10605 at 2025.764 kb on - strand, within LU632_RS10605 at 2025.764 kb on - strand, within LU632_RS10605 at 2026.014 kb on - strand at 2026.070 kb on + strand at 2026.208 kb on - strand, within LU632_RS10610 at 2026.228 kb on + strand, within LU632_RS10610 at 2026.228 kb on + strand, within LU632_RS10610 at 2026.228 kb on + strand, within LU632_RS10610 at 2026.228 kb on + strand, within LU632_RS10610 at 2026.228 kb on + strand, within LU632_RS10610 at 2026.229 kb on - strand, within LU632_RS10610 at 2026.229 kb on - strand, within LU632_RS10610 at 2026.251 kb on + strand, within LU632_RS10610 at 2026.252 kb on - strand, within LU632_RS10610 at 2026.252 kb on - strand, within LU632_RS10610
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 2,024,807 + -0.1 2,024,807 + -0.5 2,024,872 + LU632_RS10595 0.47 -1.1 2,024,893 + LU632_RS10595 0.63 -0.6 2,024,937 - +0.2 2,025,063 + -0.7 2,025,176 + LU632_RS10600 0.48 +1.0 2,025,176 + LU632_RS10600 0.48 +1.1 2,025,177 - LU632_RS10600 0.49 +0.0 2,025,177 - LU632_RS10600 0.49 +1.9 2,025,256 + LU632_RS10600 0.84 -2.3 2,025,335 + -0.2 2,025,336 - -0.8 2,025,420 + -0.2 2,025,461 + -0.5 2,025,461 + +0.3 2,025,462 - -0.5 2,025,462 - -2.2 2,025,462 - -3.0 2,025,473 - -0.3 2,025,550 + +2.5 2,025,582 + +0.4 2,025,582 + -1.6 2,025,582 + -1.1 2,025,582 + -2.6 2,025,618 - -0.3 2,025,618 - -2.8 2,025,625 + -1.3 2,025,625 + +1.0 2,025,679 + -1.6 2,025,704 - LU632_RS10605 0.12 +0.1 2,025,704 - LU632_RS10605 0.12 -2.5 2,025,754 + LU632_RS10605 0.26 +1.7 2,025,755 - LU632_RS10605 0.26 -0.7 2,025,761 - LU632_RS10605 0.28 -1.5 2,025,764 - LU632_RS10605 0.28 +1.8 2,025,764 - LU632_RS10605 0.28 +1.2 2,026,014 - -1.0 2,026,070 + -0.3 2,026,208 - LU632_RS10610 0.44 -0.1 2,026,228 + LU632_RS10610 0.50 +2.1 2,026,228 + LU632_RS10610 0.50 +0.8 2,026,228 + LU632_RS10610 0.50 +2.3 2,026,228 + LU632_RS10610 0.50 +0.4 2,026,228 + LU632_RS10610 0.50 +0.7 2,026,229 - LU632_RS10610 0.51 +0.4 2,026,229 - LU632_RS10610 0.51 -0.6 2,026,251 + LU632_RS10610 0.58 +1.1 2,026,252 - LU632_RS10610 0.58 -1.8 2,026,252 - LU632_RS10610 0.58 -0.2
Or see this region's nucleotide sequence