Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09360

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,770,775	+				-0.9
1,770,837	-				-2.7
1,770,848	+				+1.7
1,770,849	-				+0.5
1,770,849	-				-2.2
1,770,929	+		LU632_RS09350	0.21	-1.7
1,771,012	-				-1.5
1,771,027	-				-0.9
1,771,052	-				-0.5
1,771,052	-				+2.0
1,771,052	-				+1.3
1,771,229	+		LU632_RS09355	0.25	+1.9
1,771,230	-		LU632_RS09355	0.26	+0.7
1,771,230	-		LU632_RS09355	0.26	-0.1
1,771,250	-		LU632_RS09355	0.29	-1.4
1,771,560	-		LU632_RS09355	0.87	-0.5
1,771,560	-		LU632_RS09355	0.87	+0.6
1,771,560	-		LU632_RS09355	0.87	+0.3
1,771,564	-		LU632_RS09355	0.88	-1.3
1,771,564	-		LU632_RS09355	0.88	+3.4
1,771,699	+				+0.2
1,771,708	+				-2.2
1,771,777	+		LU632_RS09360	0.12	+0.9
1,771,810	+		LU632_RS09360	0.15	-1.1
1,771,845	-		LU632_RS09360	0.18	-0.3
1,771,877	+		LU632_RS09360	0.20	-1.7
1,771,878	+		LU632_RS09360	0.20	+0.5
1,771,911	-		LU632_RS09360	0.23	+1.2
1,772,039	+		LU632_RS09360	0.33	-0.7
1,772,040	-		LU632_RS09360	0.33	+0.1
1,772,040	-		LU632_RS09360	0.33	-3.7
1,772,090	-		LU632_RS09360	0.38	-1.3
1,772,174	-		LU632_RS09360	0.44	-0.9
1,772,174	-		LU632_RS09360	0.44	-0.1
1,772,174	-		LU632_RS09360	0.44	+0.1
1,772,179	+		LU632_RS09360	0.45	+0.3
1,772,179	+		LU632_RS09360	0.45	+0.5
1,772,179	+		LU632_RS09360	0.45	+2.1
1,772,180	-		LU632_RS09360	0.45	+1.1
1,772,222	-		LU632_RS09360	0.48	+1.1
1,772,365	+		LU632_RS09360	0.60	+0.1
1,772,366	-		LU632_RS09360	0.60	+0.1
1,772,410	+		LU632_RS09360	0.63	+2.2
1,772,432	-		LU632_RS09360	0.65	+2.4
1,772,432	-		LU632_RS09360	0.65	-1.7
1,772,533	-		LU632_RS09360	0.73	+0.5
1,772,537	+		LU632_RS09360	0.74	-0.5
1,772,614	+		LU632_RS09360	0.80	-0.6
1,772,614	+		LU632_RS09360	0.80	+2.3
1,772,615	-		LU632_RS09360	0.80	+1.4
1,772,615	-		LU632_RS09360	0.80	+0.8
1,772,615	-		LU632_RS09360	0.80	-0.9
1,772,659	+		LU632_RS09360	0.84	-0.2
1,772,659	+		LU632_RS09360	0.84	+1.2
1,772,839	+				-0.2
1,772,840	-				+0.4
1,772,857	+				-2.6
1,772,857	+				+0.1
1,772,857	+				-2.1
1,772,858	-				+0.0
1,772,858	-				-0.9
1,772,866	+				-0.9
1,772,932	+				+0.6
1,772,933	-				+0.0
1,772,934	+				-0.0
1,772,935	-				+0.4
1,772,949	-		LU632_RS09365	0.12	-2.3
1,772,949	-		LU632_RS09365	0.12	-0.0
1,772,949	-		LU632_RS09365	0.12	-2.5
1,772,952	+		LU632_RS09365	0.12	+1.4
1,772,952	+		LU632_RS09365	0.12	+1.5
1,772,952	+		LU632_RS09365	0.12	-0.9
1,773,065	+		LU632_RS09365	0.28	+0.9
1,773,066	-		LU632_RS09365	0.28	-1.3
1,773,069	+		LU632_RS09365	0.29	-0.1
1,773,069	+		LU632_RS09365	0.29	+1.1
1,773,070	-		LU632_RS09365	0.29	+1.7
1,773,109	+		LU632_RS09365	0.34	+2.1
1,773,187	+		LU632_RS09365	0.45	+0.3
1,773,187	+		LU632_RS09365	0.45	-0.8
1,773,188	-		LU632_RS09365	0.45	+0.2
1,773,193	+		LU632_RS09365	0.46	+0.8
1,773,194	-		LU632_RS09365	0.46	+1.5
1,773,194	-		LU632_RS09365	0.46	-0.9
1,773,265	+		LU632_RS09365	0.56	+1.7
1,773,306	+		LU632_RS09365	0.62	-0.5
1,773,306	+		LU632_RS09365	0.62	+0.3
1,773,307	-		LU632_RS09365	0.62	+1.2
1,773,307	-		LU632_RS09365	0.62	+0.7
1,773,307	-		LU632_RS09365	0.62	-0.9
1,773,316	-		LU632_RS09365	0.63	-0.5
1,773,498	-		LU632_RS09365	0.89	-1.6
1,773,509	-				+0.8
1,773,509	-				-0.5
1,773,509	-				-2.1
1,773,651	+				-1.7
1,773,651	+				+2.8
1,773,652	-				-1.3
1,773,652	-				-0.4
1,773,652	-				-2.1
1,773,652	-				-1.0
1,773,652	-				-0.0
1,773,750	+		LU632_RS09370	0.14	-0.5
1,773,751	-		LU632_RS09370	0.14	+1.0
1,773,751	-		LU632_RS09370	0.14	-2.1
1,773,757	-		LU632_RS09370	0.14	-0.7
1,773,784	+		LU632_RS09370	0.16	+0.7
1,773,794	-		LU632_RS09370	0.17	+1.7
1,773,855	+		LU632_RS09370	0.22	-0.9
1,773,856	-		LU632_RS09370	0.22	+1.3
1,773,856	-		LU632_RS09370	0.22	+0.8