Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09080

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,707,899	+				-0.5
1,708,028	+		LU632_RS09080	0.18	-2.5
1,708,028	-		LU632_RS09080	0.18	-1.5
1,708,029	-		LU632_RS09080	0.18	-2.2
1,708,032	+		LU632_RS09080	0.18	+1.5
1,708,177	+		LU632_RS09080	0.36	+1.7
1,708,177	+		LU632_RS09080	0.36	-1.2
1,708,177	+		LU632_RS09080	0.36	+0.7
1,708,177	+		LU632_RS09080	0.36	-2.6
1,708,178	-		LU632_RS09080	0.36	-0.2
1,708,178	-		LU632_RS09080	0.36	-3.3
1,708,178	-		LU632_RS09080	0.36	-0.7
1,708,242	+		LU632_RS09080	0.44	+3.5
1,708,242	+		LU632_RS09080	0.44	+3.1
1,708,329	+		LU632_RS09080	0.54	+1.2
1,708,383	-		LU632_RS09080	0.61	+4.0
1,708,383	-		LU632_RS09080	0.61	-1.8
1,708,582	-		LU632_RS09080	0.85	+3.1
1,708,582	-		LU632_RS09080	0.85	+2.1
1,708,741	+				-0.7
1,708,742	-				+0.0
1,708,827	+				-1.2
1,708,864	+				-2.4
1,708,909	-				+0.1
1,708,999	+	pgl	LU632_RS09085	0.15	-1.5
1,709,035	+	pgl	LU632_RS09085	0.19	+0.5
1,709,036	-	pgl	LU632_RS09085	0.19	+1.1
1,709,038	-	pgl	LU632_RS09085	0.19	+0.3
1,709,103	+	pgl	LU632_RS09085	0.26	-0.5
1,709,420	-	pgl	LU632_RS09085	0.57	-0.5
1,709,420	-	pgl	LU632_RS09085	0.57	+0.1