Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07510

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,412,454	+		LU632_RS07505	0.22	-1.4
1,412,607	+		LU632_RS07505	0.36	-0.9
1,412,615	+		LU632_RS07505	0.36	-2.2
1,412,616	-		LU632_RS07505	0.37	-1.4
1,412,956	+		LU632_RS07505	0.67	-2.4
1,412,956	+		LU632_RS07505	0.67	+1.1
1,412,957	-		LU632_RS07505	0.67	-0.6
1,413,001	+		LU632_RS07505	0.71	+1.1
1,413,002	-		LU632_RS07505	0.71	+0.7
1,413,177	+		LU632_RS07505	0.87	-0.6
1,413,229	+				+1.0
1,413,246	+				-1.0
1,413,247	-				+0.1
1,413,247	-				-0.6
1,413,317	-				-1.5
1,413,408	+		LU632_RS07510	0.29	-1.4
1,413,408	+		LU632_RS07510	0.29	-1.1
1,413,409	-		LU632_RS07510	0.29	-1.0
1,413,496	-		LU632_RS07510	0.54	-1.6
1,413,497	+		LU632_RS07510	0.55	-1.9
1,413,497	+		LU632_RS07510	0.55	-1.4
1,413,498	-		LU632_RS07510	0.55	+0.6
1,413,498	-		LU632_RS07510	0.55	-0.3
1,413,498	-		LU632_RS07510	0.55	-2.6
1,413,638	-				-3.0
1,413,691	+				-2.1
1,413,701	+				+2.1
1,413,901	-		LU632_RS07515	0.37	+2.1
1,413,917	+		LU632_RS07515	0.41	-2.4
1,413,942	-		LU632_RS07515	0.45	-0.3
1,413,995	+		LU632_RS07515	0.56	-0.2
1,413,996	-		LU632_RS07515	0.56	+0.7
1,414,113	+		LU632_RS07515	0.79	-0.9
1,414,114	-		LU632_RS07515	0.79	+1.6
1,414,222	+				+0.3
1,414,222	+				-3.2
1,414,222	+				-0.7
1,414,222	+				-0.4
1,414,222	+				+1.1
1,414,223	-				-0.9
1,414,223	-				+1.3
1,414,223	-				+2.5
1,414,223	-				+0.8
1,414,223	-				+1.1
1,414,226	+				-0.1
1,414,226	+				-2.3
1,414,227	-				-2.3
1,414,227	-				+0.1
1,414,237	-				-0.3
1,414,261	+				-2.6
1,414,261	+				-0.6
1,414,360	+		LU632_RS07520	0.12	+0.1
1,414,361	-		LU632_RS07520	0.12	-0.3
1,414,371	-		LU632_RS07520	0.13	+1.6
1,414,652	-		LU632_RS07520	0.37	+1.7