Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07300

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,377,799	+				-0.4
1,377,799	+				-0.9
1,377,802	+				+1.0
1,378,097	+		LU632_RS07295	0.24	+2.1
1,378,097	+		LU632_RS07295	0.24	+1.9
1,378,097	+		LU632_RS07295	0.24	+0.0
1,378,097	+		LU632_RS07295	0.24	+0.5
1,378,142	-		LU632_RS07295	0.36	-0.5
1,378,142	-		LU632_RS07295	0.36	-0.4
1,378,162	+		LU632_RS07295	0.42	+3.3
1,378,163	-		LU632_RS07295	0.42	+0.7
1,378,185	+		LU632_RS07295	0.48	-0.2
1,378,186	-		LU632_RS07295	0.48	-0.6
1,378,207	-		LU632_RS07295	0.54	-2.4
1,378,353	+				-0.9
1,378,403	+				+2.0
1,378,404	-				-2.0
1,378,404	-				-1.0
1,378,498	-				-0.3
1,378,530	+				+0.2
1,378,530	+				+2.4
1,378,530	+				+1.2
1,378,530	+				-0.8
1,378,531	-				-0.9
1,378,574	-				+2.1
1,378,574	-				-0.7
1,378,585	+				-0.4
1,378,585	+				+2.0
1,378,585	+				+0.8
1,378,585	+				+1.8
1,378,586	-				-2.2
1,378,586	-				-0.5
1,378,586	-				-0.6
1,378,619	-				-1.0
1,378,631	+				-1.9
1,378,652	-				-0.9
1,378,705	+				-1.1
1,378,705	+				+0.1
1,378,705	+				+0.2
1,378,705	+				+1.1
1,378,705	+				+1.3
1,378,706	-				+0.2
1,378,706	-				+1.1
1,378,709	+				-1.7
1,378,712	+				+1.1
1,378,712	+				+0.1
1,378,719	+				-1.5
1,378,733	+				+1.1
1,378,741	-				-0.4
1,378,769	+				+1.1
1,378,865	+	mlaA	LU632_RS07300	0.17	-1.4
1,378,870	-	mlaA	LU632_RS07300	0.18	+0.1
1,378,870	-	mlaA	LU632_RS07300	0.18	+0.1
1,378,871	+	mlaA	LU632_RS07300	0.18	-1.3
1,378,871	+	mlaA	LU632_RS07300	0.18	+0.4
1,378,872	-	mlaA	LU632_RS07300	0.18	+0.1
1,378,887	+	mlaA	LU632_RS07300	0.20	-0.2
1,378,887	+	mlaA	LU632_RS07300	0.20	+0.1
1,378,887	+	mlaA	LU632_RS07300	0.20	+0.1
1,378,888	-	mlaA	LU632_RS07300	0.20	-0.7
1,378,888	-	mlaA	LU632_RS07300	0.20	-1.4
1,378,924	-	mlaA	LU632_RS07300	0.25	-0.4
1,378,951	+	mlaA	LU632_RS07300	0.28	-1.4
1,378,952	-	mlaA	LU632_RS07300	0.29	-1.8
1,378,998	+	mlaA	LU632_RS07300	0.35	-1.8
1,379,019	+	mlaA	LU632_RS07300	0.37	-0.2
1,379,156	+	mlaA	LU632_RS07300	0.55	-1.2
1,379,157	+	mlaA	LU632_RS07300	0.56	-0.9
1,379,157	+	mlaA	LU632_RS07300	0.56	+0.1
1,379,169	+	mlaA	LU632_RS07300	0.57	-1.2
1,379,178	+	mlaA	LU632_RS07300	0.58	-0.4
1,379,179	-	mlaA	LU632_RS07300	0.58	-2.6
1,379,179	-	mlaA	LU632_RS07300	0.58	-1.7
1,379,183	-	mlaA	LU632_RS07300	0.59	-1.2
1,379,225	-	mlaA	LU632_RS07300	0.64	-2.2
1,379,248	-	mlaA	LU632_RS07300	0.67	+1.1
1,379,352	-	mlaA	LU632_RS07300	0.81	+2.4
1,379,389	-	mlaA	LU632_RS07300	0.86	+1.1
1,379,493	+				-1.8
1,379,494	-				-1.1
1,379,494	-				-0.9
1,379,531	+				-0.3
1,379,531	+				+0.1
1,379,531	+				-2.5
1,379,531	+				-2.3
1,379,531	+				-2.0
1,379,532	-				+0.6
1,379,532	-				+0.8
1,379,532	-				+1.1
1,379,532	-				+0.1
1,379,557	+				-1.4
1,379,571	+				+1.7
1,379,605	-				+0.6
1,379,642	-				+0.0
1,379,643	+				-1.1
1,379,643	+				+2.7
1,379,644	-				-0.6
1,379,650	+				-0.9
1,379,685	+	fadL	LU632_RS07305	0.11	-0.5
1,379,685	+	fadL	LU632_RS07305	0.11	-2.9
1,379,709	-	fadL	LU632_RS07305	0.13	+0.7
1,379,806	-	fadL	LU632_RS07305	0.20	+0.9
1,379,811	+	fadL	LU632_RS07305	0.21	+1.7
1,379,818	+	fadL	LU632_RS07305	0.21	+1.2
1,379,818	+	fadL	LU632_RS07305	0.21	-0.7
1,379,819	-	fadL	LU632_RS07305	0.21	+1.3
1,379,848	-	fadL	LU632_RS07305	0.24	-2.3
1,379,925	+	fadL	LU632_RS07305	0.30	+0.1
1,379,938	-	fadL	LU632_RS07305	0.31	+1.1
1,379,965	+	fadL	LU632_RS07305	0.33	+2.1
1,379,966	-	fadL	LU632_RS07305	0.33	-1.4
1,379,966	-	fadL	LU632_RS07305	0.33	+3.1
1,379,966	-	fadL	LU632_RS07305	0.33	-2.2
1,379,966	-	fadL	LU632_RS07305	0.33	+0.4
1,379,988	-	fadL	LU632_RS07305	0.35	-1.0
1,380,106	-	fadL	LU632_RS07305	0.44	+1.1
1,380,177	+	fadL	LU632_RS07305	0.49	+0.1
1,380,179	+	fadL	LU632_RS07305	0.50	+1.9
1,380,179	+	fadL	LU632_RS07305	0.50	-0.8
1,380,180	-	fadL	LU632_RS07305	0.50	-0.1
1,380,180	-	fadL	LU632_RS07305	0.50	+1.8
1,380,402	+	fadL	LU632_RS07305	0.67	-1.0
1,380,402	+	fadL	LU632_RS07305	0.67	-1.4
1,380,430	-	fadL	LU632_RS07305	0.69	+2.5
1,380,448	-	fadL	LU632_RS07305	0.70	+0.4
1,380,489	-	fadL	LU632_RS07305	0.74	+0.6