Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06915

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,324,676	-				+1.5
1,324,721	-				-0.3
1,324,747	+				-1.7
1,324,748	-				-2.3
1,324,776	+				-0.5
1,324,978	+				+0.5
1,324,978	+				+0.7
1,324,979	-				+0.1
1,324,979	-				-0.9
1,324,979	-				+0.2
1,325,089	+		LU632_RS06905	0.84	-0.3
1,325,106	+				+0.1
1,325,106	+				-0.5
1,325,107	-				-3.3
1,325,107	-				+2.6
1,325,107	-				-0.4
1,325,110	+				-0.7
1,325,110	+				+2.6
1,325,111	-				+0.1
1,325,111	-				+0.5
1,325,111	-				-0.3
1,325,111	-				-3.4
1,325,112	+				+0.8
1,325,112	+				+1.1
1,325,113	-				-1.5
1,325,113	-				+0.7
1,325,167	-				-0.3
1,325,298	+		LU632_RS06910	0.31	+1.9
1,325,318	+		LU632_RS06910	0.35	-1.1
1,325,319	-		LU632_RS06910	0.35	-0.4
1,325,514	+		LU632_RS06910	0.77	-2.5
1,325,514	+		LU632_RS06910	0.77	-1.6
1,325,515	-		LU632_RS06910	0.77	-3.5
1,325,515	-		LU632_RS06910	0.77	-1.3
1,325,515	-		LU632_RS06910	0.77	-3.4
1,325,519	+		LU632_RS06910	0.78	+1.1
1,325,535	+		LU632_RS06910	0.81	-0.5
1,325,535	+		LU632_RS06910	0.81	-3.0
1,325,536	-		LU632_RS06910	0.81	+0.1
1,325,568	-		LU632_RS06910	0.88	-1.5
1,325,600	+				+4.4
1,325,601	-				+1.4
1,325,601	-				-0.7
1,325,601	-				+1.4
1,325,601	-				-0.8
1,325,601	-				-0.3
1,325,604	+				-2.6
1,325,605	-				-0.6
1,325,658	+		LU632_RS06915	0.16	-2.0
1,325,709	-		LU632_RS06915	0.39	-2.5
1,325,709	-		LU632_RS06915	0.39	+1.1
1,325,719	-		LU632_RS06915	0.44	+0.3
1,325,740	+		LU632_RS06915	0.53	+2.6
1,325,741	-		LU632_RS06915	0.53	+0.9
1,325,741	-		LU632_RS06915	0.53	+1.1
1,326,051	+				-2.1
1,326,051	+				-0.3
1,326,051	+				-0.9
1,326,052	-				+1.1
1,326,052	-				+0.7
1,326,052	-				-0.7
1,326,052	-				+0.6
1,326,052	-				+2.6
1,326,052	-				-3.5
1,326,136	+				+1.8
1,326,143	-				-2.3
1,326,143	-				-1.7
1,326,157	+				-1.5
1,326,247	+		LU632_RS06925	0.21	-0.1
1,326,247	+		LU632_RS06925	0.21	-1.7
1,326,247	+		LU632_RS06925	0.21	-1.1
1,326,248	-		LU632_RS06925	0.21	-0.2
1,326,248	-		LU632_RS06925	0.21	-1.6
1,326,248	-		LU632_RS06925	0.21	-0.3
1,326,292	+		LU632_RS06925	0.31	-1.4
1,326,293	-		LU632_RS06925	0.31	-0.1
1,326,293	-		LU632_RS06925	0.31	-1.3
1,326,293	-		LU632_RS06925	0.31	+0.5
1,326,295	+		LU632_RS06925	0.32	+0.4
1,326,295	+		LU632_RS06925	0.32	+0.1
1,326,295	+		LU632_RS06925	0.32	-1.4
1,326,296	-		LU632_RS06925	0.32	+0.3
1,326,296	-		LU632_RS06925	0.32	-2.1
1,326,320	+		LU632_RS06925	0.38	+2.6
1,326,321	-		LU632_RS06925	0.38	+0.0
1,326,333	+		LU632_RS06925	0.41	-2.5
1,326,333	+		LU632_RS06925	0.41	-0.6
1,326,333	+		LU632_RS06925	0.41	-1.5
1,326,334	-		LU632_RS06925	0.41	-0.1
1,326,334	-		LU632_RS06925	0.41	+1.6
1,326,334	-		LU632_RS06925	0.41	-0.1
1,326,349	-		LU632_RS06925	0.44	+4.1
1,326,349	-		LU632_RS06925	0.44	-1.3
1,326,381	-		LU632_RS06925	0.52	-0.9
1,326,503	+		LU632_RS06925	0.80	-0.3
1,326,545	+		LU632_RS06925	0.89	-2.7
1,326,585	-				-0.3
1,326,635	+		LU632_RS06930	0.10	+0.2
1,326,636	-		LU632_RS06930	0.10	-0.1
1,326,722	+		LU632_RS06930	0.28	+1.8
1,326,743	+		LU632_RS06930	0.33	+0.6
1,326,777	+		LU632_RS06930	0.40	-0.4
1,326,803	+		LU632_RS06930	0.45	-2.6
1,326,803	+		LU632_RS06930	0.45	-1.6
1,326,806	+		LU632_RS06930	0.46	-1.9
1,326,807	-		LU632_RS06930	0.46	+2.1