Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05920 and LU632_RS05925 are separated by 133 nucleotides LU632_RS05925 and LU632_RS05930 are separated by 273 nucleotides LU632_RS05930 and LU632_RS05935 are separated by 193 nucleotides LU632_RS05935 and LU632_RS05940 are separated by 14 nucleotides
LU632_RS05920: LU632_RS05920 - hypothetical protein, at 1,124,778 to 1,125,068
_RS05920
LU632_RS05925: LU632_RS05925 - transcriptional regulator, at 1,125,202 to 1,125,312
_RS05925
LU632_RS05930: LU632_RS05930 - 6-phospho-beta-glucosidase, at 1,125,586 to 1,127,025
_RS05930
LU632_RS05935: LU632_RS05935 - PTS transporter subunit EIIB, at 1,127,219 to 1,127,689
_RS05935
LU632_RS05940: LU632_RS05940 - hemolysin III family protein, at 1,127,704 to 1,128,094
_RS05940
Position (kb) 1125
1126
1127
1128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1124.635 kb on - strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.718 kb on - strand at 1124.813 kb on + strand, within LU632_RS05920 at 1124.813 kb on + strand, within LU632_RS05920 at 1124.852 kb on - strand, within LU632_RS05920 at 1124.852 kb on - strand, within LU632_RS05920 at 1124.967 kb on - strand, within LU632_RS05920 at 1125.030 kb on - strand, within LU632_RS05920 at 1125.030 kb on - strand, within LU632_RS05920 at 1125.042 kb on - strand at 1125.122 kb on + strand at 1125.122 kb on + strand at 1125.123 kb on - strand at 1125.123 kb on - strand at 1125.182 kb on - strand at 1125.204 kb on - strand at 1125.279 kb on - strand, within LU632_RS05925 at 1125.295 kb on - strand, within LU632_RS05925 at 1125.328 kb on - strand at 1125.335 kb on + strand at 1125.357 kb on - strand at 1125.357 kb on - strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.395 kb on - strand at 1125.490 kb on - strand at 1125.534 kb on + strand at 1125.534 kb on + strand at 1125.535 kb on - strand at 1125.621 kb on + strand at 1125.623 kb on + strand at 1125.786 kb on - strand, within LU632_RS05930 at 1125.947 kb on + strand, within LU632_RS05930 at 1125.948 kb on - strand, within LU632_RS05930 at 1126.079 kb on + strand, within LU632_RS05930 at 1126.079 kb on + strand, within LU632_RS05930 at 1126.080 kb on - strand, within LU632_RS05930 at 1126.082 kb on + strand, within LU632_RS05930 at 1126.082 kb on + strand, within LU632_RS05930 at 1126.087 kb on + strand, within LU632_RS05930 at 1126.088 kb on - strand, within LU632_RS05930 at 1126.095 kb on + strand, within LU632_RS05930 at 1126.096 kb on - strand, within LU632_RS05930 at 1126.096 kb on - strand, within LU632_RS05930 at 1126.097 kb on + strand, within LU632_RS05930 at 1126.098 kb on - strand, within LU632_RS05930 at 1126.185 kb on - strand, within LU632_RS05930 at 1126.185 kb on - strand, within LU632_RS05930 at 1126.193 kb on + strand, within LU632_RS05930 at 1126.194 kb on - strand, within LU632_RS05930 at 1126.194 kb on - strand, within LU632_RS05930 at 1126.194 kb on - strand, within LU632_RS05930 at 1126.194 kb on - strand, within LU632_RS05930 at 1126.227 kb on - strand, within LU632_RS05930 at 1126.394 kb on + strand, within LU632_RS05930 at 1126.395 kb on - strand, within LU632_RS05930 at 1126.395 kb on - strand, within LU632_RS05930 at 1126.395 kb on - strand, within LU632_RS05930 at 1126.395 kb on - strand, within LU632_RS05930 at 1126.463 kb on + strand, within LU632_RS05930 at 1126.473 kb on + strand, within LU632_RS05930 at 1126.508 kb on + strand, within LU632_RS05930 at 1126.509 kb on - strand, within LU632_RS05930 at 1126.509 kb on - strand, within LU632_RS05930 at 1126.525 kb on - strand, within LU632_RS05930 at 1126.527 kb on - strand, within LU632_RS05930 at 1126.638 kb on + strand, within LU632_RS05930 at 1126.638 kb on + strand, within LU632_RS05930 at 1126.654 kb on - strand, within LU632_RS05930 at 1126.658 kb on + strand, within LU632_RS05930 at 1126.658 kb on + strand, within LU632_RS05930 at 1126.658 kb on + strand, within LU632_RS05930 at 1126.659 kb on - strand, within LU632_RS05930 at 1126.663 kb on - strand, within LU632_RS05930 at 1126.740 kb on + strand, within LU632_RS05930 at 1126.741 kb on - strand, within LU632_RS05930 at 1126.773 kb on + strand, within LU632_RS05930 at 1126.809 kb on + strand, within LU632_RS05930 at 1126.821 kb on - strand, within LU632_RS05930 at 1126.880 kb on - strand, within LU632_RS05930 at 1126.927 kb on - strand at 1126.927 kb on - strand at 1127.015 kb on + strand at 1127.016 kb on - strand at 1127.040 kb on - strand at 1127.043 kb on + strand at 1127.050 kb on + strand at 1127.058 kb on - strand at 1127.180 kb on + strand at 1127.180 kb on + strand at 1127.231 kb on - strand at 1127.377 kb on + strand, within LU632_RS05935 at 1127.398 kb on + strand, within LU632_RS05935 at 1127.496 kb on - strand, within LU632_RS05935 at 1127.496 kb on - strand, within LU632_RS05935 at 1127.496 kb on - strand, within LU632_RS05935 at 1127.530 kb on + strand, within LU632_RS05935 at 1127.582 kb on + strand, within LU632_RS05935 at 1127.707 kb on + strand at 1127.708 kb on - strand at 1127.759 kb on - strand, within LU632_RS05940 at 1127.759 kb on - strand, within LU632_RS05940 at 1127.819 kb on + strand, within LU632_RS05940 at 1127.820 kb on - strand, within LU632_RS05940 at 1127.826 kb on + strand, within LU632_RS05940 at 1127.837 kb on - strand, within LU632_RS05940 at 1127.841 kb on - strand, within LU632_RS05940 at 1127.978 kb on + strand, within LU632_RS05940 at 1127.978 kb on + strand, within LU632_RS05940 at 1127.979 kb on - strand, within LU632_RS05940 at 1127.986 kb on - strand, within LU632_RS05940 at 1128.010 kb on + strand, within LU632_RS05940 at 1128.023 kb on - strand, within LU632_RS05940
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 1,124,635 - -1.6 1,124,717 + +1.5 1,124,717 + -3.6 1,124,717 + -0.4 1,124,717 + -1.9 1,124,718 - -0.5 1,124,813 + LU632_RS05920 0.12 +1.9 1,124,813 + LU632_RS05920 0.12 -1.0 1,124,852 - LU632_RS05920 0.25 +1.1 1,124,852 - LU632_RS05920 0.25 -0.5 1,124,967 - LU632_RS05920 0.65 -0.1 1,125,030 - LU632_RS05920 0.87 -2.3 1,125,030 - LU632_RS05920 0.87 -0.3 1,125,042 - +4.9 1,125,122 + -0.5 1,125,122 + -1.7 1,125,123 - +0.6 1,125,123 - -0.8 1,125,182 - -0.7 1,125,204 - +0.3 1,125,279 - LU632_RS05925 0.69 +0.5 1,125,295 - LU632_RS05925 0.84 -0.9 1,125,328 - -0.1 1,125,335 + +0.3 1,125,357 - -2.5 1,125,357 - +0.3 1,125,370 + -1.1 1,125,370 + -0.9 1,125,370 + +1.0 1,125,370 + -3.7 1,125,371 - +0.3 1,125,371 - -1.6 1,125,371 - +0.1 1,125,371 - +0.3 1,125,395 - -1.9 1,125,490 - -0.7 1,125,534 + -2.1 1,125,534 + -1.3 1,125,535 - -1.2 1,125,621 + -2.1 1,125,623 + -0.9 1,125,786 - LU632_RS05930 0.14 -2.3 1,125,947 + LU632_RS05930 0.25 -1.0 1,125,948 - LU632_RS05930 0.25 -1.1 1,126,079 + LU632_RS05930 0.34 +4.8 1,126,079 + LU632_RS05930 0.34 -1.1 1,126,080 - LU632_RS05930 0.34 -1.0 1,126,082 + LU632_RS05930 0.34 -1.7 1,126,082 + LU632_RS05930 0.34 -0.4 1,126,087 + LU632_RS05930 0.35 -1.0 1,126,088 - LU632_RS05930 0.35 +1.0 1,126,095 + LU632_RS05930 0.35 -0.7 1,126,096 - LU632_RS05930 0.35 -1.1 1,126,096 - LU632_RS05930 0.35 -1.7 1,126,097 + LU632_RS05930 0.35 -0.5 1,126,098 - LU632_RS05930 0.36 -0.2 1,126,185 - LU632_RS05930 0.42 +1.3 1,126,185 - LU632_RS05930 0.42 -2.3 1,126,193 + LU632_RS05930 0.42 -2.3 1,126,194 - LU632_RS05930 0.42 -1.9 1,126,194 - LU632_RS05930 0.42 -0.6 1,126,194 - LU632_RS05930 0.42 -1.0 1,126,194 - LU632_RS05930 0.42 -1.1 1,126,227 - LU632_RS05930 0.45 +1.3 1,126,394 + LU632_RS05930 0.56 -0.2 1,126,395 - LU632_RS05930 0.56 +0.1 1,126,395 - LU632_RS05930 0.56 -0.5 1,126,395 - LU632_RS05930 0.56 -0.1 1,126,395 - LU632_RS05930 0.56 -1.3 1,126,463 + LU632_RS05930 0.61 +0.1 1,126,473 + LU632_RS05930 0.62 -1.5 1,126,508 + LU632_RS05930 0.64 -1.3 1,126,509 - LU632_RS05930 0.64 -0.9 1,126,509 - LU632_RS05930 0.64 -2.4 1,126,525 - LU632_RS05930 0.65 +2.1 1,126,527 - LU632_RS05930 0.65 +0.3 1,126,638 + LU632_RS05930 0.73 -0.5 1,126,638 + LU632_RS05930 0.73 -0.2 1,126,654 - LU632_RS05930 0.74 +2.4 1,126,658 + LU632_RS05930 0.74 -1.0 1,126,658 + LU632_RS05930 0.74 +0.6 1,126,658 + LU632_RS05930 0.74 -2.5 1,126,659 - LU632_RS05930 0.75 +1.0 1,126,663 - LU632_RS05930 0.75 +0.2 1,126,740 + LU632_RS05930 0.80 -0.1 1,126,741 - LU632_RS05930 0.80 +2.1 1,126,773 + LU632_RS05930 0.82 -2.8 1,126,809 + LU632_RS05930 0.85 -0.0 1,126,821 - LU632_RS05930 0.86 -0.8 1,126,880 - LU632_RS05930 0.90 -0.7 1,126,927 - -0.3 1,126,927 - -0.5 1,127,015 + +0.2 1,127,016 - +0.1 1,127,040 - +1.5 1,127,043 + +0.7 1,127,050 + -0.9 1,127,058 - -0.5 1,127,180 + -3.9 1,127,180 + +0.8 1,127,231 - +1.1 1,127,377 + LU632_RS05935 0.34 -0.5 1,127,398 + LU632_RS05935 0.38 +0.1 1,127,496 - LU632_RS05935 0.59 +1.2 1,127,496 - LU632_RS05935 0.59 -2.1 1,127,496 - LU632_RS05935 0.59 -1.7 1,127,530 + LU632_RS05935 0.66 +1.7 1,127,582 + LU632_RS05935 0.77 -0.8 1,127,707 + +0.4 1,127,708 - -0.5 1,127,759 - LU632_RS05940 0.14 -0.7 1,127,759 - LU632_RS05940 0.14 +0.1 1,127,819 + LU632_RS05940 0.29 -1.3 1,127,820 - LU632_RS05940 0.30 +1.9 1,127,826 + LU632_RS05940 0.31 -0.1 1,127,837 - LU632_RS05940 0.34 -0.5 1,127,841 - LU632_RS05940 0.35 -2.5 1,127,978 + LU632_RS05940 0.70 -0.3 1,127,978 + LU632_RS05940 0.70 +2.1 1,127,979 - LU632_RS05940 0.70 -0.6 1,127,986 - LU632_RS05940 0.72 +0.1 1,128,010 + LU632_RS05940 0.78 -2.3 1,128,023 - LU632_RS05940 0.82 -0.4
Or see this region's nucleotide sequence