Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05250

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
1,014,356	+	umuC	LU632_RS05245	0.31	-1.2
1,014,357	-	umuC	LU632_RS05245	0.31	+0.8
1,014,612	+	umuC	LU632_RS05245	0.51	+1.1
1,014,741	+	umuC	LU632_RS05245	0.61	-0.2
1,014,741	+	umuC	LU632_RS05245	0.61	+2.5
1,014,741	+	umuC	LU632_RS05245	0.61	+1.2
1,014,742	-	umuC	LU632_RS05245	0.62	-0.5
1,014,817	-	umuC	LU632_RS05245	0.67	-0.7
1,014,822	+	umuC	LU632_RS05245	0.68	-0.2
1,014,823	-	umuC	LU632_RS05245	0.68	-1.2
1,014,827	-	umuC	LU632_RS05245	0.68	+0.1
1,014,868	+	umuC	LU632_RS05245	0.71	-0.5
1,014,934	-	umuC	LU632_RS05245	0.77	-1.7
1,015,029	+	umuC	LU632_RS05245	0.84	-0.9
1,015,111	+				+2.0
1,015,112	-				-2.3
1,015,234	-				+1.8
1,015,238	-				+0.1
1,015,242	+				-0.3
1,015,316	+				-0.8
1,015,439	+		LU632_RS05250	0.19	-0.1
1,015,442	-		LU632_RS05250	0.20	-2.2
1,015,484	-		LU632_RS05250	0.26	-1.5
1,016,068	-				+0.1
1,016,078	+				+0.3
1,016,149	+				-0.1
1,016,149	+				+1.1
1,016,149	+				-0.6
1,016,149	+				-0.4
1,016,173	+				-1.5
1,016,174	-				+2.8
1,016,174	-				+0.9
1,016,227	-				+0.4
1,016,227	-				+2.3
1,016,227	-				+0.2
1,016,237	-				+1.1
1,016,257	+				-0.5
1,016,260	-				+0.1
1,016,288	+				+2.0
1,016,305	-				+0.4
1,016,372	+				+1.4
1,016,373	-				+2.7
1,016,533	-				-0.8
1,016,638	-				-2.3
1,016,645	-				-1.5
1,016,645	-				+1.4