Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04825 and LU632_RS04830 are separated by 307 nucleotides LU632_RS04830 and LU632_RS04835 overlap by 4 nucleotides LU632_RS04835 and LU632_RS04840 are separated by 144 nucleotides LU632_RS04840 and LU632_RS04845 overlap by 14 nucleotides LU632_RS04845 and LU632_RS04850 overlap by 1 nucleotides
LU632_RS04825: LU632_RS04825 - IS1 family transposase, at 944,568 to 945,157
_RS04825
LU632_RS04830: LU632_RS04830 - integrative conjugative element protein, RAQPRD family, at 945,465 to 945,768
_RS04830
LU632_RS04835: LU632_RS04835 - TIGR03758 family integrating conjugative element protein, at 945,765 to 946,004
_RS04835
LU632_RS04840: LU632_RS04840 - hypothetical protein, at 946,149 to 946,409
_RS04840
LU632_RS04845: LU632_RS04845 - TIGR03751 family conjugal transfer lipoprotein, at 946,396 to 946,800
_RS04845
LU632_RS04850: LU632_RS04850 - conjugative transfer ATPase, at 946,800 to 949,008
_RS04850
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.183 kb on + strand at 945.185 kb on + strand at 945.192 kb on + strand at 945.193 kb on - strand at 945.218 kb on - strand at 945.218 kb on - strand at 945.250 kb on + strand at 945.251 kb on - strand at 945.251 kb on - strand at 945.269 kb on - strand at 945.269 kb on - strand at 945.335 kb on + strand at 945.335 kb on + strand at 945.336 kb on - strand at 945.336 kb on - strand at 945.357 kb on + strand at 945.367 kb on - strand at 945.473 kb on + strand at 945.474 kb on - strand at 945.485 kb on + strand at 945.515 kb on + strand, within LU632_RS04830 at 945.515 kb on + strand, within LU632_RS04830 at 945.516 kb on - strand, within LU632_RS04830 at 945.636 kb on + strand, within LU632_RS04830 at 945.645 kb on + strand, within LU632_RS04830 at 945.692 kb on + strand, within LU632_RS04830 at 945.696 kb on + strand, within LU632_RS04830 at 945.696 kb on + strand, within LU632_RS04830 at 945.696 kb on + strand, within LU632_RS04830 at 945.697 kb on - strand, within LU632_RS04830 at 945.697 kb on - strand, within LU632_RS04830 at 945.697 kb on - strand, within LU632_RS04830 at 945.697 kb on - strand, within LU632_RS04830 at 945.697 kb on - strand, within LU632_RS04830 at 945.863 kb on - strand, within LU632_RS04835
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 945,183 + -0.1 945,185 + +0.2 945,192 + -1.8 945,193 - +1.0 945,218 - -1.0 945,218 - +1.2 945,250 + +0.0 945,251 - +0.4 945,251 - +1.2 945,269 - -2.3 945,269 - -1.2 945,335 + +0.9 945,335 + +0.6 945,336 - +2.3 945,336 - -0.8 945,357 + +0.4 945,367 - +1.2 945,473 + -0.8 945,474 - -0.0 945,485 + -1.5 945,515 + LU632_RS04830 0.16 -2.0 945,515 + LU632_RS04830 0.16 +0.4 945,516 - LU632_RS04830 0.17 +0.6 945,636 + LU632_RS04830 0.56 +0.2 945,645 + LU632_RS04830 0.59 -1.4 945,692 + LU632_RS04830 0.75 -2.0 945,696 + LU632_RS04830 0.76 -1.2 945,696 + LU632_RS04830 0.76 -0.7 945,696 + LU632_RS04830 0.76 -1.0 945,697 - LU632_RS04830 0.76 +0.4 945,697 - LU632_RS04830 0.76 +1.2 945,697 - LU632_RS04830 0.76 +2.2 945,697 - LU632_RS04830 0.76 +2.7 945,697 - LU632_RS04830 0.76 -1.4 945,863 - LU632_RS04835 0.41 -1.1
Or see this region's nucleotide sequence