Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03730 and LU632_RS03735 are separated by 87 nucleotides LU632_RS03735 and LU632_RS03740 are separated by 88 nucleotides LU632_RS03740 and LU632_RS03745 are separated by 289 nucleotides LU632_RS03745 and rsmC are separated by 103 nucleotides
LU632_RS03730: LU632_RS03730 - GGDEF domain-containing protein, at 744,843 to 745,096
_RS03730
LU632_RS03735: LU632_RS03735 - DUF1435 domain-containing protein, at 745,184 to 745,459
_RS03735
LU632_RS03740: LU632_RS03740 - tRNA-Leu, at 745,548 to 745,634
_RS03740
LU632_RS03745: LU632_RS03745 - hypothetical protein, at 745,924 to 746,439
_RS03745
LU632_RS03750: rsmC - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 746,543 to 747,571
rsmC
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 744.969 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.127 kb on - strand at 745.134 kb on + strand at 745.140 kb on - strand at 745.161 kb on + strand at 745.165 kb on + strand at 745.166 kb on - strand at 745.178 kb on + strand at 745.178 kb on + strand at 745.179 kb on - strand at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.260 kb on + strand, within LU632_RS03735 at 745.646 kb on - strand at 745.658 kb on + strand at 745.658 kb on + strand at 745.711 kb on - strand at 745.731 kb on + strand at 746.090 kb on - strand, within LU632_RS03745 at 746.159 kb on + strand, within LU632_RS03745 at 746.393 kb on + strand at 746.394 kb on - strand at 746.449 kb on - strand at 746.497 kb on + strand at 746.497 kb on + strand at 746.497 kb on + strand at 746.497 kb on + strand at 746.498 kb on - strand at 746.498 kb on - strand at 746.498 kb on - strand at 746.498 kb on - strand at 746.500 kb on - strand at 746.500 kb on - strand at 746.502 kb on - strand at 746.502 kb on - strand at 746.517 kb on + strand at 746.544 kb on + strand at 746.577 kb on + strand at 746.770 kb on + strand, within rsmC at 746.776 kb on + strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.777 kb on - strand, within rsmC at 746.850 kb on - strand, within rsmC at 746.984 kb on - strand, within rsmC at 746.986 kb on + strand, within rsmC at 746.987 kb on - strand, within rsmC at 746.987 kb on - strand, within rsmC at 746.987 kb on - strand, within rsmC at 746.995 kb on + strand, within rsmC at 746.995 kb on + strand, within rsmC at 746.996 kb on - strand, within rsmC at 747.001 kb on + strand, within rsmC at 747.013 kb on + strand, within rsmC at 747.014 kb on - strand, within rsmC at 747.014 kb on - strand, within rsmC at 747.088 kb on - strand, within rsmC at 747.088 kb on - strand, within rsmC at 747.127 kb on + strand, within rsmC at 747.145 kb on - strand, within rsmC at 747.327 kb on + strand, within rsmC at 747.328 kb on - strand, within rsmC at 747.427 kb on - strand, within rsmC at 747.427 kb on - strand, within rsmC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 744,969 - LU632_RS03730 0.50 -0.6 745,062 - LU632_RS03730 0.86 +0.8 745,062 - LU632_RS03730 0.86 +1.8 745,062 - LU632_RS03730 0.86 -1.1 745,127 - +1.0 745,134 + +2.0 745,140 - +0.2 745,161 + -0.4 745,165 + +1.7 745,166 - +4.8 745,178 + +0.6 745,178 + -0.2 745,179 - +0.1 745,239 + LU632_RS03735 0.20 -0.2 745,239 + LU632_RS03735 0.20 -0.7 745,239 + LU632_RS03735 0.20 -2.2 745,260 + LU632_RS03735 0.28 -0.7 745,646 - +0.9 745,658 + -1.1 745,658 + +2.1 745,711 - -1.6 745,731 + -2.4 746,090 - LU632_RS03745 0.32 -1.8 746,159 + LU632_RS03745 0.46 -0.8 746,393 + +2.0 746,394 - -0.7 746,449 - -0.2 746,497 + +0.5 746,497 + -0.7 746,497 + +1.8 746,497 + -0.7 746,498 - -0.0 746,498 - -1.1 746,498 - -0.8 746,498 - +0.3 746,500 - -1.0 746,500 - +1.3 746,502 - -0.3 746,502 - +1.5 746,517 + +0.5 746,544 + +0.5 746,577 + -1.9 746,770 + rsmC LU632_RS03750 0.22 +1.1 746,776 + rsmC LU632_RS03750 0.23 -0.0 746,777 - rsmC LU632_RS03750 0.23 -2.5 746,777 - rsmC LU632_RS03750 0.23 +2.1 746,777 - rsmC LU632_RS03750 0.23 +1.0 746,777 - rsmC LU632_RS03750 0.23 -0.8 746,777 - rsmC LU632_RS03750 0.23 -0.7 746,777 - rsmC LU632_RS03750 0.23 +1.9 746,777 - rsmC LU632_RS03750 0.23 +3.0 746,850 - rsmC LU632_RS03750 0.30 -0.4 746,984 - rsmC LU632_RS03750 0.43 -0.5 746,986 + rsmC LU632_RS03750 0.43 +0.3 746,987 - rsmC LU632_RS03750 0.43 -0.5 746,987 - rsmC LU632_RS03750 0.43 -1.0 746,987 - rsmC LU632_RS03750 0.43 +0.4 746,995 + rsmC LU632_RS03750 0.44 -1.5 746,995 + rsmC LU632_RS03750 0.44 -0.4 746,996 - rsmC LU632_RS03750 0.44 -0.3 747,001 + rsmC LU632_RS03750 0.45 +0.2 747,013 + rsmC LU632_RS03750 0.46 -0.6 747,014 - rsmC LU632_RS03750 0.46 -0.8 747,014 - rsmC LU632_RS03750 0.46 +0.3 747,088 - rsmC LU632_RS03750 0.53 +0.2 747,088 - rsmC LU632_RS03750 0.53 -1.8 747,127 + rsmC LU632_RS03750 0.57 +0.9 747,145 - rsmC LU632_RS03750 0.59 +0.5 747,327 + rsmC LU632_RS03750 0.76 +1.2 747,328 - rsmC LU632_RS03750 0.76 -0.3 747,427 - rsmC LU632_RS03750 0.86 +0.0 747,427 - rsmC LU632_RS03750 0.86 -0.2
Or see this region's nucleotide sequence