Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysC and LU632_RS03610 overlap by 38 nucleotides LU632_RS03610 and LU632_RS03615 overlap by 8 nucleotides LU632_RS03615 and LU632_RS03620 are separated by 68 nucleotides LU632_RS03620 and LU632_RS03625 overlap by 4 nucleotides LU632_RS03625 and LU632_RS03630 are separated by 6 nucleotides
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024
_RS03610
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514
_RS03625
LU632_RS03630: LU632_RS03630 - baseplate assembly protein, at 728,521 to 729,429
_RS03630
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.793 kb on + strand, within LU632_RS03610 at 726.835 kb on + strand, within LU632_RS03610 at 726.836 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.936 kb on - strand, within LU632_RS03610 at 726.986 kb on + strand at 726.987 kb on - strand at 726.987 kb on - strand at 727.009 kb on + strand at 727.009 kb on + strand at 727.010 kb on - strand at 727.027 kb on + strand at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615 at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.869 kb on - strand, within LU632_RS03620 at 727.893 kb on + strand, within LU632_RS03620 at 728.101 kb on + strand, within LU632_RS03620 at 728.229 kb on + strand, within LU632_RS03625 at 728.230 kb on - strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.323 kb on - strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.407 kb on + strand, within LU632_RS03625 at 728.407 kb on - strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.454 kb on + strand, within LU632_RS03625 at 728.470 kb on - strand, within LU632_RS03625 at 728.512 kb on + strand at 728.719 kb on - strand, within LU632_RS03630 at 729.030 kb on + strand, within LU632_RS03630 at 729.090 kb on + strand, within LU632_RS03630
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 726,699 - LU632_RS03610 0.30 +0.3 726,699 - LU632_RS03610 0.30 -0.7 726,699 - LU632_RS03610 0.30 +1.3 726,699 - LU632_RS03610 0.30 +1.1 726,793 + LU632_RS03610 0.50 -0.1 726,835 + LU632_RS03610 0.59 +0.9 726,836 - LU632_RS03610 0.60 -0.3 726,927 - LU632_RS03610 0.79 -1.0 726,927 - LU632_RS03610 0.79 -2.7 726,927 - LU632_RS03610 0.79 +0.1 726,935 + LU632_RS03610 0.81 +1.3 726,935 + LU632_RS03610 0.81 -0.4 726,936 - LU632_RS03610 0.81 -0.7 726,986 + +0.3 726,987 - +0.3 726,987 - +2.3 727,009 + -1.0 727,009 + -0.3 727,010 - +0.7 727,027 + -1.8 727,260 - LU632_RS03615 0.54 +0.6 727,400 - LU632_RS03615 0.85 +0.3 727,468 + +2.5 727,468 + +2.5 727,469 - -0.7 727,534 + +0.2 727,540 + +2.3 727,541 - -1.9 727,541 - +1.0 727,541 - +0.3 727,541 - -0.1 727,541 - -1.5 727,546 - +0.9 727,660 + LU632_RS03620 0.20 +0.7 727,660 + LU632_RS03620 0.20 +0.3 727,660 + LU632_RS03620 0.20 +0.4 727,660 + LU632_RS03620 0.20 +2.1 727,869 - LU632_RS03620 0.53 +1.2 727,893 + LU632_RS03620 0.56 +1.4 728,101 + LU632_RS03620 0.89 +0.1 728,229 + LU632_RS03625 0.18 +0.6 728,230 - LU632_RS03625 0.18 +0.3 728,322 + LU632_RS03625 0.45 -0.1 728,322 + LU632_RS03625 0.45 -0.2 728,323 - LU632_RS03625 0.45 +3.9 728,406 + LU632_RS03625 0.69 -1.0 728,406 + LU632_RS03625 0.69 +0.8 728,406 + LU632_RS03625 0.69 +1.0 728,406 + LU632_RS03625 0.69 -1.7 728,407 + LU632_RS03625 0.69 +1.0 728,407 - LU632_RS03625 0.69 +0.3 728,446 + LU632_RS03625 0.80 -0.4 728,446 + LU632_RS03625 0.80 +1.5 728,446 + LU632_RS03625 0.80 -0.9 728,447 - LU632_RS03625 0.80 -2.2 728,447 - LU632_RS03625 0.80 +2.6 728,447 - LU632_RS03625 0.80 -1.2 728,454 + LU632_RS03625 0.82 -0.7 728,470 - LU632_RS03625 0.87 +0.7 728,512 + -0.6 728,719 - LU632_RS03630 0.22 -1.4 729,030 + LU632_RS03630 0.56 +1.3 729,090 + LU632_RS03630 0.63 +0.3
Or see this region's nucleotide sequence