Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03355 and LU632_RS03360 are separated by 248 nucleotides LU632_RS03360 and LU632_RS03365 are separated by 377 nucleotides
LU632_RS03355: LU632_RS03355 - hypothetical protein, at 689,159 to 689,371
_RS03355
LU632_RS03360: LU632_RS03360 - methyl-accepting chemotaxis protein, at 689,620 to 691,278
_RS03360
LU632_RS03365: LU632_RS03365 - IS1 family transposase, at 691,656 to 692,353
_RS03365
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 688.644 kb on + strand at 688.648 kb on + strand at 688.648 kb on + strand at 688.730 kb on - strand at 688.747 kb on + strand at 688.747 kb on + strand at 688.748 kb on - strand at 688.748 kb on - strand at 688.811 kb on - strand at 688.811 kb on - strand at 688.815 kb on - strand at 688.920 kb on - strand at 688.920 kb on - strand at 689.106 kb on + strand at 689.107 kb on - strand at 689.172 kb on + strand at 689.172 kb on + strand at 689.303 kb on - strand, within LU632_RS03355 at 689.306 kb on + strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355 at 689.467 kb on + strand at 689.467 kb on + strand at 689.479 kb on - strand at 689.560 kb on - strand at 689.560 kb on - strand at 689.562 kb on - strand at 689.572 kb on + strand at 689.637 kb on + strand at 689.862 kb on + strand, within LU632_RS03360 at 690.015 kb on - strand, within LU632_RS03360 at 690.184 kb on - strand, within LU632_RS03360 at 690.184 kb on - strand, within LU632_RS03360 at 690.525 kb on + strand, within LU632_RS03360 at 690.526 kb on + strand, within LU632_RS03360 at 690.526 kb on - strand, within LU632_RS03360 at 690.528 kb on - strand, within LU632_RS03360 at 690.583 kb on + strand, within LU632_RS03360 at 690.681 kb on + strand, within LU632_RS03360 at 690.681 kb on + strand, within LU632_RS03360 at 690.688 kb on - strand, within LU632_RS03360 at 690.731 kb on + strand, within LU632_RS03360 at 690.731 kb on + strand, within LU632_RS03360 at 690.779 kb on - strand, within LU632_RS03360 at 690.779 kb on - strand, within LU632_RS03360 at 690.795 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.809 kb on - strand, within LU632_RS03360 at 690.809 kb on - strand, within LU632_RS03360 at 690.868 kb on - strand, within LU632_RS03360 at 690.989 kb on + strand, within LU632_RS03360 at 690.989 kb on + strand, within LU632_RS03360 at 691.000 kb on - strand, within LU632_RS03360 at 691.086 kb on - strand, within LU632_RS03360 at 691.096 kb on - strand, within LU632_RS03360 at 691.117 kb on + strand at 691.117 kb on + strand at 691.117 kb on + strand at 691.118 kb on - strand at 691.153 kb on - strand at 691.201 kb on + strand at 691.201 kb on + strand at 691.282 kb on - strand at 691.282 kb on - strand at 691.282 kb on - strand at 691.283 kb on + strand at 691.283 kb on + strand at 691.284 kb on - strand at 691.284 kb on - strand at 691.284 kb on - strand at 691.366 kb on - strand at 691.389 kb on - strand at 691.431 kb on + strand at 691.432 kb on - strand at 691.473 kb on + strand at 691.473 kb on + strand at 691.474 kb on - strand at 691.474 kb on - strand at 691.595 kb on + strand at 691.596 kb on - strand at 691.612 kb on + strand at 691.629 kb on + strand at 691.630 kb on - strand at 691.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 688,644 + +1.0 688,648 + +0.3 688,648 + -1.1 688,730 - -1.1 688,747 + +0.0 688,747 + -1.9 688,748 - -0.1 688,748 - +0.5 688,811 - +0.7 688,811 - -0.8 688,815 - -0.6 688,920 - +5.4 688,920 - +0.1 689,106 + -1.7 689,107 - +2.0 689,172 + +1.3 689,172 + -0.5 689,303 - LU632_RS03355 0.68 -2.4 689,306 + LU632_RS03355 0.69 +0.0 689,307 - LU632_RS03355 0.69 -0.3 689,307 - LU632_RS03355 0.69 -0.7 689,467 + +1.1 689,467 + -0.3 689,479 - -0.2 689,560 - +0.3 689,560 - -2.1 689,562 - +1.0 689,572 + -0.2 689,637 + +0.2 689,862 + LU632_RS03360 0.15 -0.6 690,015 - LU632_RS03360 0.24 -1.3 690,184 - LU632_RS03360 0.34 +4.0 690,184 - LU632_RS03360 0.34 +0.6 690,525 + LU632_RS03360 0.55 +0.3 690,526 + LU632_RS03360 0.55 -0.2 690,526 - LU632_RS03360 0.55 +0.0 690,528 - LU632_RS03360 0.55 -0.3 690,583 + LU632_RS03360 0.58 -1.1 690,681 + LU632_RS03360 0.64 -1.1 690,681 + LU632_RS03360 0.64 +1.3 690,688 - LU632_RS03360 0.64 +3.1 690,731 + LU632_RS03360 0.67 +1.6 690,731 + LU632_RS03360 0.67 -1.0 690,779 - LU632_RS03360 0.70 +0.6 690,779 - LU632_RS03360 0.70 +0.3 690,795 + LU632_RS03360 0.71 +0.0 690,808 + LU632_RS03360 0.72 -1.4 690,808 + LU632_RS03360 0.72 -0.6 690,808 + LU632_RS03360 0.72 +1.4 690,808 + LU632_RS03360 0.72 +1.1 690,808 + LU632_RS03360 0.72 +0.3 690,809 - LU632_RS03360 0.72 +0.1 690,809 - LU632_RS03360 0.72 +1.0 690,868 - LU632_RS03360 0.75 -0.3 690,989 + LU632_RS03360 0.83 +0.3 690,989 + LU632_RS03360 0.83 +5.4 691,000 - LU632_RS03360 0.83 +1.3 691,086 - LU632_RS03360 0.88 +0.8 691,096 - LU632_RS03360 0.89 -2.1 691,117 + -1.3 691,117 + -1.1 691,117 + -3.8 691,118 - +1.3 691,153 - -0.8 691,201 + -1.6 691,201 + +0.9 691,282 - -2.6 691,282 - +1.3 691,282 - -0.1 691,283 + +1.5 691,283 + +1.8 691,284 - -0.2 691,284 - +0.9 691,284 - -2.8 691,366 - +0.3 691,389 - +1.7 691,431 + +0.7 691,432 - -0.2 691,473 + -0.2 691,473 + +0.2 691,474 - -0.1 691,474 - +0.5 691,595 + -0.3 691,596 - -0.3 691,612 + -0.3 691,629 + -0.8 691,630 - -1.4 691,630 - +0.5
Or see this region's nucleotide sequence