Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02780

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS02770 and LU632_RS02775 overlap by 29 nucleotidesLU632_RS02775 and LU632_RS02780 are separated by 62 nucleotidesLU632_RS02780 and LU632_RS02785 are separated by 105 nucleotides LU632_RS02770: LU632_RS02770 - IS5 family transposase, at 561,818 to 562,643 _RS02770 LU632_RS02775: LU632_RS02775 - IS6 family transposase, at 562,615 to 562,761 _RS02775 LU632_RS02780: LU632_RS02780 - transposase, at 562,824 to 563,051 _RS02780 LU632_RS02785: LU632_RS02785 - hypothetical protein, at 563,157 to 564,776 _RS02785 Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1 2 3at 562.759 kb on + strandat 562.892 kb on + strand, within LU632_RS02780at 563.064 kb on - strandat 563.177 kb on - strandat 563.237 kb on + strandat 563.282 kb on + strandat 563.317 kb on + strandat 563.317 kb on + strandat 563.317 kb on + strandat 563.418 kb on - strand, within LU632_RS02785at 563.520 kb on - strand, within LU632_RS02785at 563.608 kb on - strand, within LU632_RS02785at 563.761 kb on + strand, within LU632_RS02785at 563.762 kb on - strand, within LU632_RS02785at 563.764 kb on - strand, within LU632_RS02785at 563.764 kb on - strand, within LU632_RS02785at 563.783 kb on + strand, within LU632_RS02785at 563.783 kb on + strand, within LU632_RS02785at 563.784 kb on - strand, within LU632_RS02785at 563.784 kb on - strand, within LU632_RS02785at 563.912 kb on - strand, within LU632_RS02785at 563.960 kb on + strand, within LU632_RS02785at 563.960 kb on + strand, within LU632_RS02785at 563.961 kb on - strand, within LU632_RS02785at 563.961 kb on - strand, within LU632_RS02785at 563.998 kb on + strand, within LU632_RS02785at 563.999 kb on - strand, within LU632_RS02785at 564.002 kb on + strand, within LU632_RS02785at 564.003 kb on - strand, within LU632_RS02785at 564.016 kb on + strand, within LU632_RS02785at 564.016 kb on + strand, within LU632_RS02785at 564.047 kb on + strand, within LU632_RS02785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
remove
562,759 + +0.6
562,892 + LU632_RS02780 0.30 -1.0
563,064 - +0.3
563,177 - -0.8
563,237 + -1.1
563,282 + -0.9
563,317 + +1.9
563,317 + +1.8
563,317 + -0.3
563,418 - LU632_RS02785 0.16 -1.0
563,520 - LU632_RS02785 0.22 +0.3
563,608 - LU632_RS02785 0.28 +1.7
563,761 + LU632_RS02785 0.37 +0.5
563,762 - LU632_RS02785 0.37 -0.2
563,764 - LU632_RS02785 0.37 -1.5
563,764 - LU632_RS02785 0.37 -0.5
563,783 + LU632_RS02785 0.39 +0.3
563,783 + LU632_RS02785 0.39 -0.3
563,784 - LU632_RS02785 0.39 -1.2
563,784 - LU632_RS02785 0.39 +1.3
563,912 - LU632_RS02785 0.47 +2.0
563,960 + LU632_RS02785 0.50 -0.8
563,960 + LU632_RS02785 0.50 +0.8
563,961 - LU632_RS02785 0.50 -1.2
563,961 - LU632_RS02785 0.50 -1.4
563,998 + LU632_RS02785 0.52 -1.5
563,999 - LU632_RS02785 0.52 +0.3
564,002 + LU632_RS02785 0.52 +2.9
564,003 - LU632_RS02785 0.52 -1.0
564,016 + LU632_RS02785 0.53 -2.5
564,016 + LU632_RS02785 0.53 -0.3
564,047 + LU632_RS02785 0.55 +0.3

Or see this region's nucleotide sequence