Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02700 and LU632_RS02705 are separated by 60 nucleotides LU632_RS02705 and djlA are separated by 179 nucleotides djlA and lptD are separated by 274 nucleotides
LU632_RS02700: LU632_RS02700 - IS5 family transposase, at 542,615 to 543,440
_RS02700
LU632_RS02705: LU632_RS02705 - IS6 family transposase, at 543,501 to 543,963
_RS02705
LU632_RS02710: djlA - co-chaperone DjlA, at 544,143 to 544,964
djlA
LU632_RS02715: lptD - LPS assembly protein LptD, at 545,239 to 547,641
lptD
Position (kb) 544
545 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 543.471 kb on + strand at 543.471 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.503 kb on + strand at 544.047 kb on - strand at 544.047 kb on - strand at 544.049 kb on - strand at 544.054 kb on - strand at 544.129 kb on - strand at 544.145 kb on - strand at 544.148 kb on + strand at 544.149 kb on - strand at 544.149 kb on - strand at 544.191 kb on - strand at 544.276 kb on - strand, within djlA at 544.400 kb on - strand, within djlA at 544.493 kb on + strand, within djlA at 544.498 kb on + strand, within djlA at 544.498 kb on + strand, within djlA at 544.499 kb on - strand, within djlA at 544.579 kb on - strand, within djlA at 544.623 kb on - strand, within djlA at 544.734 kb on - strand, within djlA at 544.896 kb on + strand at 544.897 kb on - strand at 544.964 kb on + strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.966 kb on + strand at 544.966 kb on + strand at 544.966 kb on + strand at 544.966 kb on - strand at 544.966 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 545.005 kb on + strand at 545.021 kb on + strand at 545.022 kb on - strand at 545.075 kb on + strand at 545.075 kb on + strand at 545.186 kb on + strand at 545.186 kb on + strand at 545.186 kb on + strand at 545.187 kb on - strand at 545.187 kb on - strand at 545.187 kb on - strand at 545.188 kb on + strand at 545.188 kb on + strand at 545.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 543,471 + -0.6 543,471 + +4.0 543,473 + -1.3 543,473 + -0.6 543,473 + -0.9 543,501 + +3.2 543,501 + +3.6 543,503 + -0.2 544,047 - -0.7 544,047 - -0.5 544,049 - +0.9 544,054 - +2.7 544,129 - +1.1 544,145 - -0.2 544,148 + +1.0 544,149 - -1.5 544,149 - +1.3 544,191 - +1.0 544,276 - djlA LU632_RS02710 0.16 -1.5 544,400 - djlA LU632_RS02710 0.31 +0.3 544,493 + djlA LU632_RS02710 0.43 -1.7 544,498 + djlA LU632_RS02710 0.43 -1.8 544,498 + djlA LU632_RS02710 0.43 -1.4 544,499 - djlA LU632_RS02710 0.43 +0.1 544,579 - djlA LU632_RS02710 0.53 -0.2 544,623 - djlA LU632_RS02710 0.58 -0.3 544,734 - djlA LU632_RS02710 0.72 -1.6 544,896 + -0.8 544,897 - +0.4 544,964 + -0.0 544,965 - -0.1 544,965 - +0.7 544,965 - -1.7 544,965 - +0.5 544,966 + +1.3 544,966 + -1.0 544,966 + -1.7 544,966 - -0.7 544,966 - -1.9 544,967 - -0.5 544,967 - -0.3 544,967 - +1.3 544,967 - -0.3 544,967 - +1.5 544,967 - +1.3 544,967 - +1.6 545,005 + -0.3 545,021 + +0.1 545,022 - +1.5 545,075 + +0.3 545,075 + +0.9 545,186 + +1.8 545,186 + -1.3 545,186 + +0.1 545,187 - -2.3 545,187 - -0.2 545,187 - -1.5 545,188 + +0.3 545,188 + -2.2 545,212 + -0.6
Or see this region's nucleotide sequence