Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02020 and LU632_RS02025 are separated by 207 nucleotides LU632_RS02025 and nnr overlap by 4 nucleotides
LU632_RS02020: LU632_RS02020 - hypothetical protein, at 396,835 to 397,008
_RS02020
LU632_RS02025: LU632_RS02025 - hypothetical protein, at 397,216 to 397,404
_RS02025
LU632_RS02030: nnr - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 397,401 to 398,921
nnr
Position (kb) 397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 396.329 kb on - strand at 396.336 kb on + strand at 396.336 kb on + strand at 396.423 kb on + strand at 396.454 kb on - strand at 396.454 kb on - strand at 396.454 kb on - strand at 396.516 kb on - strand at 396.573 kb on + strand at 396.574 kb on - strand at 396.651 kb on + strand at 396.709 kb on + strand at 396.710 kb on - strand at 396.728 kb on - strand at 396.728 kb on - strand at 396.752 kb on + strand at 396.858 kb on + strand, within LU632_RS02020 at 397.043 kb on + strand at 397.075 kb on - strand at 397.075 kb on - strand at 397.107 kb on + strand at 397.107 kb on + strand at 397.108 kb on - strand at 397.110 kb on + strand at 397.110 kb on + strand at 397.111 kb on - strand at 397.120 kb on + strand at 397.250 kb on - strand, within LU632_RS02025 at 397.278 kb on + strand, within LU632_RS02025 at 397.278 kb on + strand, within LU632_RS02025 at 397.318 kb on + strand, within LU632_RS02025 at 397.318 kb on + strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.459 kb on + strand at 397.469 kb on - strand at 397.515 kb on + strand at 397.515 kb on + strand at 397.516 kb on - strand at 397.516 kb on - strand at 397.516 kb on - strand at 397.592 kb on - strand, within nnr at 397.694 kb on + strand, within nnr at 397.979 kb on + strand, within nnr at 397.981 kb on + strand, within nnr at 397.982 kb on - strand, within nnr at 398.022 kb on + strand, within nnr at 398.022 kb on + strand, within nnr at 398.023 kb on - strand, within nnr at 398.040 kb on + strand, within nnr at 398.177 kb on + strand, within nnr at 398.179 kb on + strand, within nnr at 398.180 kb on - strand, within nnr at 398.330 kb on + strand, within nnr
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 396,329 - -1.3 396,336 + +0.9 396,336 + -1.9 396,423 + -3.4 396,454 - +0.5 396,454 - -0.3 396,454 - -0.3 396,516 - -0.7 396,573 + -1.8 396,574 - -1.8 396,651 + +1.3 396,709 + -0.5 396,710 - +4.4 396,728 - +0.7 396,728 - -1.1 396,752 + +1.0 396,858 + LU632_RS02020 0.13 +0.5 397,043 + +0.8 397,075 - +0.1 397,075 - -0.0 397,107 + -1.5 397,107 + +1.1 397,108 - +1.8 397,110 + +0.3 397,110 + -0.5 397,111 - +0.2 397,120 + -0.1 397,250 - LU632_RS02025 0.18 +0.0 397,278 + LU632_RS02025 0.33 +1.4 397,278 + LU632_RS02025 0.33 -1.1 397,318 + LU632_RS02025 0.54 +2.9 397,318 + LU632_RS02025 0.54 +0.6 397,319 - LU632_RS02025 0.54 -0.7 397,319 - LU632_RS02025 0.54 -3.7 397,319 - LU632_RS02025 0.54 -0.7 397,324 + LU632_RS02025 0.57 -0.2 397,324 + LU632_RS02025 0.57 +3.1 397,324 + LU632_RS02025 0.57 +1.3 397,459 + +4.7 397,469 - -0.2 397,515 + -2.7 397,515 + -0.1 397,516 - +0.3 397,516 - -1.1 397,516 - +0.8 397,592 - nnr LU632_RS02030 0.13 -2.4 397,694 + nnr LU632_RS02030 0.19 -2.2 397,979 + nnr LU632_RS02030 0.38 +0.6 397,981 + nnr LU632_RS02030 0.38 +0.3 397,982 - nnr LU632_RS02030 0.38 +5.9 398,022 + nnr LU632_RS02030 0.41 +1.4 398,022 + nnr LU632_RS02030 0.41 +0.3 398,023 - nnr LU632_RS02030 0.41 -0.1 398,040 + nnr LU632_RS02030 0.42 +1.0 398,177 + nnr LU632_RS02030 0.51 -0.1 398,179 + nnr LU632_RS02030 0.51 +1.7 398,180 - nnr LU632_RS02030 0.51 +1.2 398,330 + nnr LU632_RS02030 0.61 -0.9
Or see this region's nucleotide sequence